Alberto Perez's Avatar

Alberto Perez

@perezlab.bsky.social

#compchem assistant professor at #UF chemistry. We work on protein-peptide and protein- nucleic acid structure predictions with integrative biology tools.

312 Followers  |  1,180 Following  |  5 Posts  |  Joined: 17.11.2024  |  2.3836

Latest posts by perezlab.bsky.social on Bluesky

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Mark your calendars for the ACS COMP *SUNDAY* Social on August 17, 2025! Free German ๐Ÿฅจ&๐Ÿป for COMP members, sponsored by OpenEye + Cadence ๐Ÿ’ป

RSVP link dropping soon in all ACS COMP members' email inboxes :)

22.07.2025 20:45 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Unexpectedly, @jurgjn.bsky.social found that running Alphafold3 predictions for protein interactions can yield ipTM scores that are more predictive of true interactions when run in pools of proteins instead of pairwise predictions. Presumably, this reflects some sort of "competition effect".

22.07.2025 14:13 โ€” ๐Ÿ‘ 87    ๐Ÿ” 30    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 3
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I think Sergei @sokrypton.org first pointed to It here
State-of-the-Art Estimation of Protein Model Accuracy Using AlphaFold - PubMed share.google/tiRaXnDkbFrq...

29.07.2025 23:19 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Mark your calendars for the ACS COMP Saturday Social on March 22, 2025! Free ๐ŸŒฎ & ๐Ÿป for COMP members!

If you didnโ€™t get the RSVP link in your email inbox, DM us with a screenshot of your COMP membership and weโ€™ll shoot you the RSVP link ๐Ÿ˜

#ACSSpring2025 #chemsky

13.03.2025 22:42 โ€” ๐Ÿ‘ 6    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
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๐Ÿงช๐Ÿ“… The ACS COMP agenda for #ACSSpring2025 is here! Get ready for cutting-edge sessions in computational chemistry.

Scan the QR code to explore the full schedule ๐Ÿ”๐Ÿ‘‡
#ACSCOMP #CompChem #Cheminformatics #DrugDiscovery @chemsky.bsky.social

23.03.2025 00:07 โ€” ๐Ÿ‘ 12    ๐Ÿ” 8    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

๐Ÿšจ PLEASE RT ๐Ÿšจ

Are you a comp chem trainee attending Spring ACS in San Diego? Would you like to expand your network with mentors in industry & academia at the COMP Mentor Lunch?

Fill out this form if you are interested in attending!

forms.gle/Sq79TJihHnFW...

23.03.2025 00:38 โ€” ๐Ÿ‘ 7    ๐Ÿ” 8    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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It was great to show how we combine AI, molecular simulations, and experiments to understand the BET interactome at the Sanibel symposium! #compchem

28.02.2025 20:33 โ€” ๐Ÿ‘ 5    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

๐ŸŽ‰ MELD turns 10! A decade of accelerating molecular dynamics & integrative structural biology. From novel methods to new insights on biomoleculesโ€”excited for whatโ€™s next! ๐Ÿงฌ
๐Ÿ”ฌ Read more: pubs.acs.org/doi/10.1021/...
@UFChemistry @JCIM #CompChem #MolecularDynamics #StructuralBiology

09.02.2025 17:24 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Canโ€™t get enough of this: ants vs humans!

03.01.2025 16:11 โ€” ๐Ÿ‘ 64    ๐Ÿ” 9    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 0
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Proteomic changes upon treatment with semaglutide in individuals with obesity - Nature Medicine Using serum samples collected from participants of the STEP 1 and STEP 2 trials, the authors have uncovered changes to the proteome upon semaglutide treatment, which can shed light on the mechanism of...

The effects of GLP-1 drug (semaglutide) on the proteome shows broad impact, potential relevance to many diseases beyond obesity
nature.com/articles/s41...

03.01.2025 16:37 โ€” ๐Ÿ‘ 105    ๐Ÿ” 35    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 2
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LEGOLAS: a Machine Learning method for rapid and accurate predictions of protein NMR chemical shifts. This work introduces LEGOLAS, a fully open source TorchANI-based neural network model designed to predict NMR chemical shifts for protein backbone atoms. LEGOLAS has been designed to be fast, and with...

Ever wanted to predict protein NMR chemical shifts accurately and very very fast ? Great new paper from MIkailya Darrows @mdarrows.bsky.social. chemrxiv.org/engage/chemr...

Comments are welcome !

03.01.2025 17:33 โ€” ๐Ÿ‘ 32    ๐Ÿ” 11    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 3
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Nucleosome spacing can fine-tune higher order chromatin assembly [labs of Rosana Collepardo-Guevara and Michael Rosen]
www.biorxiv.org/content/10.1...
โ–ถ๏ธphase separation is decided by trade-off between inter- and intramolecular nucleosome stacking, favoured by 10N+5 and 10N bp linkers, respectively

28.12.2024 20:13 โ€” ๐Ÿ‘ 29    ๐Ÿ” 9    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from @msftresearch.bsky.social ch AI for Science.

www.biorxiv.org/content/10.1...

06.12.2024 08:38 โ€” ๐Ÿ‘ 440    ๐Ÿ” 147    ๐Ÿ’ฌ 21    ๐Ÿ“Œ 29
University of Florida - Details - Post-Doctoral Associate in Computational Chemistry

We are looking for a #CompChem postdoc to implement MELD (Modeling Employing Limited Data) into the AMBER suite of programs and test new applications in integrative modeling. Work with
@adrianroitberg.bsky.social
and me at #UFChemistry! Apply here explore.jobs.ufl.edu/en-us/job/53...

26.11.2024 15:48 โ€” ๐Ÿ‘ 8    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Florida #HighSchools Join us
#UFChemistry
for the 2025 #UFChemathon!
#UF_CLAS

26.11.2024 15:38 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

#GoodThingsComeToThoseWait Sorry it's taking us a while. Promise that the wait will be well worth it! #OpenFold3 Love all the great work that's already been done #HelixFold3 #Ligo #Chai1 #Protenix #Boltz1

20.11.2024 10:34 โ€” ๐Ÿ‘ 119    ๐Ÿ” 26    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 2

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