@dengziqi1991.bsky.social
Postdoc in @CBGP_Madrid developing computational methods for phylogenetic and metagenomic analysis in @cgmlaboratory github.com/dengzq1234/
The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by
Claudia Sanchis, part of her PhD thesis!
www.biorxiv.org/content/10.1...
Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes
Check with the latest features of TreeProfiler in github.com/compgenomics... and
github.com/dengzq1234/t.... Here is a small demo of profiling tree over 100k leaves with multipule columns of presence/absence matrix.
We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees"
biorxiv.org/content/10.1...
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.bsky.social
First time to cover new ETE4 features: Interactive viz of huge tree, profiling...
In Madrid, April 21-25. Travel fellowships available!
