@dengziqi1991.bsky.social
Postdoc in @CBGP_Madrid developing computational methods for phylogenetic and metagenomic analysis in @cgmlaboratory github.com/dengzq1234/
Many thanks travel funds support from Conexión BCB of @csic.es to make it happen!
21.08.2025 16:44 — 👍 0 🔁 0 💬 0 📌 0
It could be very overwhelming with all the biological stories going in a few days. Considering a few minutes for something lighter? Here we present just a software TreeProfiler to help your large scale phylogenetic analysis and visualization. Considering it for your arsenal! @eseb2025.bsky.social
21.08.2025 14:50 — 👍 6 🔁 1 💬 0 📌 1
For those at #ESEB2025 today please come along to my poster! Excited to talk about how powerful mutation bias can be in adaptation :)
@eseb2025.bsky.social @eseb.bsky.social
*correct poster session 17:00 - 19:00
17.08.2025 10:48 — 👍 1 🔁 0 💬 0 📌 0I will present my work TreeProfiler in #eseb2025 @eseb2025.bsky.social at poster session on Thursday 19:00-21:00. Welcome to stop by at P03 315! :)
17.08.2025 10:46 — 👍 10 🔁 1 💬 1 📌 0
The rare microbial biosphere harbors many chemosensitive microorganisms undetectable by regular shotgun metagenomics. We can now explore them using our custom target-capture sequencing approach. Impressive work by
Claudia Sanchis, part of her PhD thesis!
www.biorxiv.org/content/10.1...
Awesome work by Ziqi Deng: TreeProfiler: a tool for large-scale metadata profiling along gene and species trees.
biorxiv.org/content/10.1...
Interactive dynamic visualization of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes
Check with the latest features of TreeProfiler in github.com/compgenomics... and
github.com/dengzq1234/t.... Here is a small demo of profiling tree over 100k leaves with multipule columns of presence/absence matrix.
We have updated our work "TreeProfiler: a tool for large-scale metadata profiling along gene and species trees"
biorxiv.org/content/10.1...
Interactive viz of large trees + custom traits, MSA, domain architectures, functional terms & more + summary of features at internal nodes.
Pre-registration is now open for our second (free) course on phylogenomic data analysis and visualization using ETE, funded by @cziscience.bsky.social
First time to cover new ETE4 features: Interactive viz of huge tree, profiling...
In Madrid, April 21-25. Travel fellowships available!
