Ignacio Arganda-Carreras

Awesome place, team and group leader! 🤩 I can tell from my own experience 🤗

Thank YOU for organizing! Our session was a lot of fun, looking forward to the recordings 🤗

We just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji.

It ships many new features, detailed below, but that are articulated around the following:

👀 Please look for the project ID MCIU-NO24/P36 and verify your status.

⏱️ Deadline for corrections / submitting missing documents: 24 November 2025 (inclusive).

If your application appears as *excluded* or *requiring correction*, submit the required documents before that date.

🗓️ Important update for the candidates!

The provisional list of admitted and excluded applications for the FPI 2025 call (associated with the project TOSBI – MCIU-NO24/P36) has been published by the University of the Basque Country (UPV/EHU).

🔗 Check the list here: www.ehu.eus/documents/29...

❗The official application call for our PhD position has already started:

www.ehu.eus/es/web/ikerk...

Since most of the application is in either Spanish or Basque, I have prepared a document in English 👇

drive.google.com/file/d/1q0mH...

Looking forward to receiving applications! 🤩

Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️

¡Atención comunidad científica de Latam! 🌎🔬

Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer.

¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇

Congrats!! 🤩

✨ Fantastic opportunity for people looking for image facility jobs! What better than working with the awesome @jytinevez.bsky.social in Paris? 🤩

#bioimaging #bioimageanalysis #facilityjob

👇

👇 The official call opening has been delayed ⌛ by the university to the end of this week.

Sorry about that, I'll keep you posted! 🙏

#skyvision 🤓🤗

In case someone prefers to apply this way, I also opened a LinkedIn job offer:

www.linkedin.com/jobs/view/43...

#phd #bioimaging #deeplearning #bioimageanalysis #joboffer

Thanks a lot, @lmescu.bsky.social ! 🤗

🥲

📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

Resulta que en #NaukasBilbao25 hasta las moléculas de agua bailan, con @elirezabal.bsky.social

Sigue en directo Naukas Bilbao 15º Aniversario - Naukas Edición especial 15º Aniversario – Palacio Euskalduna de Bilbao – Viernes 19 y sábado 20 de septiembre. En colaboración con la Cátedra de Cultura Científica de la UPV/EHU hemos preparado un fantástico...

Online aquí: naukas.com/2025/09/19/s...

Programa definitivo de Naukas Bilbao 15º Aniversario - Naukas Programa definitivo Naukas Bilbao 15 Aniversario (19 al 21 septiembre 2025)

¿Alguien en Bilbao hoy (sábado 20 de septiembre)?

No perderse la charla de la maravillosa @elirezabal.bsky.social 😍 (@theochemehu.bsky.social, @dipcehu.bsky.social) en @naukas.bsky.social #NAUKAS2025

⏰11:30 a 11:40 – 💫Elixabete Rezabal💫 – ¿Hueles vibraciones? 👃📳

naukas.com/2025/09/12/p...

First page of 18th century Basque-Icelandic dictionary. A Basque-Icelandic pidgin was spoken between locals and Basque whalers from ~1600 including the well-known expression "Fenicha for ju" meaning F**k you! en.m.wikipedia.org/wiki/Basque%...

Oh là là 😍

a cartoon llama is holding a microphone and the words boom are above it ALT: a cartoon llama is holding a microphone and the words boom are above it

And that’s a wrap! I’m flying home. Hope everybody had as much fun as I had 🤗

@ahklemm.bsky.social @perrinegil.bsky.social @tischi.bsky.social you’re awesome!

Big thanks to all speakers & students & @events.embl.org staff for this amazing week 🤩

Webcam view of the classroom of the EMBO course on "Advanced methods in bioimage analysis", during Practical session 7: "Statistical spatial analysis and modeling with BIP", by Philippe Andrey (Inrae, France).

Zoom view of the screen of Philippe Andrey (Inrae, France) during Practical session 7: "Statistical spatial analysis and modeling with BIP", at of the EMBO course on "Advanced methods in bioimage analysis". The online participant cameras are shown on top, while a Linux terminal with BIP commands is shown on the bottom.

Last but not least, we have @philippeandrey.bsky.social from @inrae-france.bsky.social with Practical session 7: "Statistical spatial analysis and modeling with BIP" 📊

We're learning about 💫BIP (Biological Image Processing)💫, the command-line 🖥️ #BioimageAnalysis solution from his lab.

Fynn Beuttenmüller is taking to the students during Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany). The screen shows the Ilastik interface displaying an EM section with mitochondria segmented in yellow by a domain-adapted model.

Fynn Beuttenmüller is looking at his screen during Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany). The screen shows the Ilastik interface displaying an EM section with mitochondria segmented in red by a model enhancer.

Panoramic view of the classroom during Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany).

Fynn Beuttenmüller is taking to the students during the exercises of Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany).

... domain adaptation🔃, enhancers✨... How cool is that? 😎

Thanks a lot, @ahklemm.bsky.social! It's tough to post on social networks while presenting 😜

I hope the students of the @embo.org course on Advanced methods in #BioimageAnalysis liked @biapyx.bsky.social 🤗

Fynn Beuttenmüller addresses the students in the classroom during Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany).

Screenshot of the screen during Practical session 6: "AI for Life Sciences", of the EMBO course on Advanced methods in bioimage analysis at EMBL (Heidelberg, Germany). The screen shows the Ilastik interface displaying an EM section with mitochondria segmented in yellow by the model trained previously in BiaPy.

And now Fynn Beuttenmüller from @embl.org is showing us all the cool stuff behind the BioImage Model Zoo 🦒 and @ilastik-team.bsky.social 🖥️🎨

For instance, students learnt how to load and apply the @biapyx.bsky.social models from the zoo into @ilastik-team.bsky.social 😊 ...

Google Colab

First part of the session was dedicated to @biapyx.bsky.social, learning 🎓 about how to create #DeepLearning based workflows for #BioimageAnalysis tasks 🛠️

In particular, students got their hands on the notebook 📓 for 2D semantic segmentation:

colab.research.google.com/github/BiaPy...

Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk is already addressing the crowd of students, while they seat on their computer posts.

Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students, while she holds a cup of tea.

Panoramic view of the classroom during Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students from the stage.

And here we are on Day 6️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @events.embl.org

Anna Kreshuk is already shining at the stage answering questions about Practical session 6: "AI for Life Sciences" 🤖🧬🧪, especially about @ilastik-team.bsky.social ✊🖌️

Good night!

After an intense week of learning, coding and playing with advanced methods on #BioimageAnalysis, a well deserved BBQ 🔥 to recover our strength 💪 for tomorrow, the last day of the course 😢

Enjoy!