Luis Alonso Baez

Lab is expanding to a new horizon of imaging!

I am extremely proud of my grad student @juliazheku.bsky.social Julia to take a lead on our new Vibratome and create this GORGEOUS 3D image of the radial section of wheat root.

NEW ARTICLE FROM THE LAB 🎉🍀🧫

Groundbreaking work performed by @hueihsuantsai.bsky.social and all!

Please, go have a read! Congrats to making it to the cover!!!

www.science.org/doi/10.1126/...

Don't forget to submit your abstract until October 1, 2025 to join this amazing lineup of speakers at the 9th International BioBrillouin Conference from Nov 25-27 in Berlin! Looking forward to seeing you there 🤩

JXB EDITORIAL INTERNSHIPS 2026 "My JXB internship was an excel-lent opportunity to gain first-hand experience of the editorial and publishing process." Sujit Jung Karki, University College Dublin, JXB intern 2024 19 "I had the opportunity to publish an Insight article as the sole author, which was something I did not expect to be able to achieve at this early point in my career." Katie Watson, University of Hong Kong, JXB intern 2025 "Being an editorial intern has been an enriching and formative experience." Luis Alonso Baez, Norwegian University of Science and Technology, JXB intern 2025 Apply by 30th September 2025 bit.ly/jxbinterns

💡 Did you know the JXB Editorial Internships call is now open? 💡

This is the 4th round of our internship programme 🌱
Check out what past interns had to say about their experience 👩‍💻

Deadline: 30 Sept
👉 bit.ly/jxbinterns?ut...

#PlantScience 🧪

Transgenerational polarity axis inheritance during Ceratopteris embryogenesis For sexually reproducing organisms to pass on their genetic information, progeny must successfully establish. Various life history strategies have evolved, using either dispersal of large numbers of p...

We are happy to present the magnum opus of Sjoerd Woudenberg, at the close of his PhD – Transgenerational inheritance of the polarity axis in a fern embryo…a thread (1/17)

tinyurl.com/4y53xekv

Dual role of the receptor kinase FERONIA in regulating tissue mechanics and growth https://www.biorxiv.org/content/10.1101/2025.08.28.672783v1

Some Impressions of the FASEB Mechanism of Plant Development - 110 attendees, two keynotes, 46 Talks & 83 posters but one passion: understand plant development 🌱🧪🔬🧑‍💻 #PDevSRC

What plant(s) should we study? This post discusses Arabidopsis thaliana as a prominent model plant, highlighting its many advantages. However, although research on Arabidopsis has advanced understanding of plant biology, researc…

A deep dive into the concept of model plant for you this week – and a big mention of the ‘A’ word…
Intrigued?
More at plantcuttings.uk/2025/08/22/w...
Cheers!
#Botany
#PlantScience

A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle - Nature Plants This study presents an extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents ten distinct developmental time points inclusive of six diverse organs.

From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...

‼️Abstract submissions is open for the 9th International BioBrillouin Meeting (biobrillouin25.com) that will take place at the Max Planck Society Conference House in Berlin, Germany on the November 25-27, 2025.

Deadline for abstract submission: October 1, 2025
#BioBrillouin

Excited for the @faseborg.bsky.social's upcoming #PlantDevelopment conference in Massachusetts? #PDevSRC

To complement the meeting, we've curated a collection of review-type and Research Articles on this topic:
journals.biologists.com/dev/collecti...

One of the key aspects influencing morphogenesis is mechanics. We mapped the mechanical properties of living roots at the tissue and cellular levels using Brillouin microscopy and molecular rotors.

www.biorxiv.org/content/10.1...

(1/10) I am excited to share this signature review from our lab published @jxbotany.bsky.social

Congratulations to @ohazel.bsky.social and @jessicaa-orr.bsky.social (first published paper for Jessica!)

Nuclear positioning and cell division site specification in plants
doi.org/10.1093/jxb/...

@sara-morghen.bsky.social giving a great talk about her PhD project involving ABA and mechanics at #PlantCellWallMeeting2025 in Vancouver. @hydrosensing.bsky.social

Arrived together with @sara-morghen.bsky.social to the beautiful UBC campus in Vancouver for the Plant Cell Wall Conference 2025. Ready to discuss the relation between cell walls, water sensing, abscisic acid and mechanobiology. @hydrosensing.bsky.social #plantcellwalls

Think vacuoles are just plant cell dumpsters? Think again.
They sense. They signal. They reshape. They fight back! ⚔️

Vacuoles are emerging as central hubs for plant resilience and adaptation. 🌱

@plantophagy.bsky.social and I unpack it all in our new review. Check it out!

🔗 doi.org/10.1016/j.pb...

Plants monitor the integrity of their barrier by sensing gas diffusion - Nature A study using Arabidopsis shows that plants can monitor the integrity of their outer barriers by sensing gas diffusion, enabling them to initiate wound repair to prevent water loss and pathogen entry.

How plants sense injury in their barrier tissue, periderm? Painstakingly detailed and amazing work by post doc Hiroyuki Iida shows that wounding is sensed by the diffusion of two gases: ethylene and oxygen. @treebiocoe.bsky.social‬ @erc.europa.eu‬ 1/x 🧵 www.nature.com/articles/s41...

Stomatal transpiration and rapid programmed cell death ☠️ triggered by lowered ambient humidity causes anther tissue collapse for effective pollen release !

Happy to be part of this great PNAS story with @kampova.bsky.social, Matyáš Fendrych, and @svosolsobe.bsky.social! www.pnas.org/doi/10.1073/...

Imaging of specialized plant cell walls by improved cryo-CLEM and cryo-electron tomography https://www.biorxiv.org/content/10.1101/2025.06.01.657137v1

Epidermal cells acquire different cell shapes to enable their functions and maintain tissue integrity in plants. Meristematic cells differentiate and expand into diverse mature cell types, including jigsaw puzzle-shaped pavement cells (a), round stomatal guard cells (b), elongated epidermal cells in hypocotyls and the apical hook (c), and root epidermal cells with root hairs (d). The spatial distribution and arrangement of cell wall polysaccharides, such as cellulose microfibrils, xyloglucans, and pectins (e.g., homogalacturonan represent as HG), and the abundance of methylester groups on these components in differentiating cells regulate anisotropy during cell growth, enabling the acquisition of specific cell shapes. In addition, proteins like KATANIN and CLASP reorient dynamically the cortical microtubules. These cortical microtubules rearrangement is in response to mechanical cues, either self-generated (as in b, c) or from neighboring cells (a, c), leading to the resulting cell shape. Attribution-NonCommercial-NoDerivatives 4.0 International

Auxin controls cell expansion by regulating cell wall biosynthesis and cell remodeling. Auxin promotes cell expansion by acidifying the cell wall and activating wall synthesis and loosening enzymes. Auxin efflux (PINs) and influx (AUX1) transporters establish concentration gradients in growing tissue. Auxin enters cells via influx transporters and activates the TRANSPORT INHIBITOR RESPONSE 1/AUXIN SIGNALING F-BOX PROTEINS-AUXIN/INDOLE ACETIC ACID (TIR1/AFB-Aux/IAA) nuclear signaling cascade, which regulates auxin-responsive genes, including AUXIN RESPONSE FACTORs (ARFs) and SMALL AUXIN UP RNAs (SAURs). Auxin activates the H+-ATPase proton pump through TRANSMEMBRANE KINASE 1 (TMK1), acidifying the cell wall and triggering loosening enzymes including PECTIN METHYLESTERASEs (PMEs), EXPANSINs, and XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASEs (EXTs). Cellulose microfibrils are synthesized by the plasma membrane-bound cellulose synthase complex (CSC), with cortical microtubules guiding the exocytosis of this complex toward expanding cell edges. Auxin coordinates the reorientation of cortical microtubules and actin filaments to regulate the trafficking of cell wall polysaccharides to ensure proper cell wall expansion and specific cell shape acquisition. Attribution-NonCommercial-NoDerivatives 4.0 International

🌱🧩 How do plant cells get their shape? 🧪

Check out the new #open-access #review exploring the mechanochemical duet between auxin & the cell wall in shaping diverse plant cell types from @srobertgroup.bsky.social's Lab.

🔗 doi.org/10.1111/ppl....

#PlantBiology #CellShape #Auxin #Biomechanics

#PDevSRC is back for 2025! The premier platform for experts in plant developmental biology to collaborate will welcome keynotes Siobhan Brady and Niko Geldner. Check out the video and view the full agenda: buff.ly/FD5WJgb

Cuscuta crawling over a hapless plant. The sickly yellow threads of the parasite are wrapped around the green of the victim like a thick spider's web.

How do parasitic plants find their prey? New study shows dodder vines use touch sensitivity and light detection to hunt victims. These master grafters even attempt to parasitize metal objects.

Learn more: wp.me/pdRZhH-m3g

#Botany #PlantScience 🧪

The Cell Wall Controls Stem Cell Fate in the Arabidopsis Shoot Apical Meristem https://www.biorxiv.org/content/10.1101/2025.05.19.654883v1

A Timeline of Discovery and Innovation in Arabidopsis Catherine Freed, Arif Ashraf, Nancy A Eckardt, Adrienne H K Roeder, Joanna Friesner; A Timeline of Discovery and Innovation in Arabidopsis, The Plant Cell,

I had a lot of fun digging into old literature to make this timeline of Discovery & Innovation in Arabidopsis!
🌱Also includes important Community contributions- a topic that is close to my ❤️
academic.oup.com/plcell/advan...

Conserved mechanical hallmark guides four-way junction avoidance during plant cytokinesis When building an organ, adjacent cells coordinate to form topologically stable junctions by integrating mechanosensitive signaling pathways. Positioni…

🚨Our paper is out!

If you ever wonder how four-way junctions are avoided during plant cell division, some answers here 🧬🍀🔬🧪🤓

👇
www.sciencedirect.com/science/arti...

Schematic representation of a longitudinal section of the juvenile root meristem and the regulatory networks controlling changes in division orientation. In the epidermis/lateral root cap (LRC), the SMB–FEZ pathway is responsible for regulating the division guiding changes in division orientation that generate the epidermis and LRC. In the ground tissue, the SHR–SCR module guides the changes in division orientation that generate the cortex and endodermal tissues. In the vascular tissue, the TMO5/LHW–DOF2.1 module and, more specifically in the phloem, PEAR transcription factors, drive oriented divisions that regulate vascular proliferation. Inset: developmental trajectories for the various cell types found in the root meristem, beginning from the quiescent centre (QC) in the centre and ending outermost with the final forms.

🧬🌱 EXPERT VIEW 🌱🧬

'Intrinsic cues guiding changes in division orientation in the Arabidopsis root meristem: a formative experience' - Konstantinova et al. doi.org/10.1093/jxb/...

#PlantScience 🧪

The dynamic and diverse nature of parenchyma cells in the Arabidopsis root during secondary growth - Nature Plants A combination of lineage tracing and single-cell RNA sequencing reveals how xylem and phloem parenchyma cells in the secondary tissue of Arabidopsis root mature gradually. Upon root barrier injury, th...

It's out! Detailed transcriptome atlas of mature Arabidopsis root undergoing secondary growth. Fantastic work by Munan Lyu and Hiroyuki Iida + other lab members, wonderful collab with @bertderybel.bsky.social lab on the scRNAseq analysis. @treebiocoe.bsky.social 1/x www.nature.com/articles/s41...

Mechanical interactions between tissue layers underlie plant morphogenesis Nature Plants - Anthers, the male reproductive organs in plants, are a model to explore the establishment of complex three-dimensional shapes. Live imaging, genetics and modelling reveal an active...

Do you want to know how mechanical interaction between tissue layers controls the formation of complex organ shapes in plants? 🔬🌼
🚨Our latest collaborative work with @routierlab.bsky.social is now published @natureplants.bsky.social
Find out more👉 rdcu.be/efad3

Full-field Brillouin microscopy based on an imaging Fourier-transform spectrometer Nature Photonics - A Fourier-transform imaging spectrometer enables two-dimensional spectral Brillouin imaging at a throughput of up to 40,000 spectra per second over a...

Thrilled and proud about our latest advancement in Brillouin microscopy - enabling true light-sheet like mechanical imaging at high throughput. Out today in @naturephotonics.bsky.social
Congratulations Carlo! @carlobevilacqua.bsky.social
rdcu.be/eaDiX

Home This site contains the complete version of the Fiji Training Manual that is written and maintained by Cameron Nowell of the Monash Institue of Pharmaceutical Science. This manual is provided under the...

Answering the call of @haesleinhuepf.bsky.social, Christian Tischer, Pete Bankhead, @kbias.bsky.social @bethcimini.bsky.social
My Fiji training notes are now FAIR. All online in an open format to download and use for teaching and training. All in Google Doc or PDF formats
bit.ly/4hkfEBF