CiFi: Accurate long-read chromatin conformation capture with low-input requirements | bioRxiv
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
NEW: HiFi now brings Hi-C to #HiFisequencing with CiFi. Traditional short-read Hi-C falls short in repetitive and low-complexity regions, but #PacBio HiFi delivers with superior accuracy and lower input needs. bit.ly/4b8k10m
#AGBT #AGBTGM
21.02.2025 20:03 β π 15 π 6 π¬ 0 π 2
With #PacBio Compatible, #HiFisequencing fits seamlessly into any lab and any omics application. Visit our suite at #AGBT in Lanai Suite 289 to explore our industry partnerships and learn how PacBio technology can elevate your research.Β #AGBT25
24.02.2025 17:01 β π 5 π 2 π¬ 0 π 0
On top, five Andropogoneae grass species, from left to right Zea mays subsp. mays, Hemarthria uncinata, Miscanthus sinensis, Sorghum bicolor, Andropogon gerardi. On bottom, a map of the world, with collection sites of Andropogoneae grasses in points. A green background shows the distribution of Andropogoneae grasses throughout tropical and temperate latitudes
On left, a phylogeny of Andropogoneae species, with 14 independent polyploidy origins noted. On right, genome size and repeat content of each assembly. Across all assemblies, average assembly size is 1.9 Gb, and average repeat size is 1.5 Gb.
New preprint featuring my favorite maize-relatives, the Andropogoneae! We sequenced the genomes of 27 species, including lemongrass, kangaroo grass, little and big bluestem, and more -- key species that shape grasslands and prairies worldwide. www.biorxiv.org/content/10.1...
27.01.2025 21:33 β π 50 π 30 π¬ 1 π 0
EM Server
Kiharalab EM Server
π EM Server Webinar: Protein Modeling with DiffModeler & DeepMainmast! π§¬
π
Feb 5, 2025
ποΈ Dr. Daisuke Kihara, Dr. Genki Terashi, Pranav Punuru
Topics: DiffModeler & DeepMainmast advanced cryo-EM protein modeling, DAQ tools, CryoREAD & more.
π register: kiharalab-events-5ab900351568.herokuapp.com
31.01.2025 00:13 β π 1 π 0 π¬ 0 π 0
Apologies for the confusion! This internal event is exclusively for Purdue students, research staff, and faculty, and it requires signing in before registration.
17.01.2025 02:55 β π 1 π 0 π¬ 0 π 0
Microsoft Forms
Purdue students/staff/faculty: Join us for The Genomics Exchange, a weekly online series for bioinformatics & genomics enthusiasts! π
ποΈ First session: Friday, Jan 17, 2025
β° Time: 11:00 AM EST
π Online via Teams
Register π: forms.office.com/r/BtHXQ1tEkQ
Letβs connect & exchange ideas! π
17.01.2025 00:18 β π 1 π 0 π¬ 1 π 0
Published: Movi: A fast and cache-efficient full-text pangenome index www.cell.com/iscience/ful... π§¬π₯οΈπ§ͺ
12.12.2024 10:16 β π 20 π 10 π¬ 0 π 0
09.12.2024 22:43 β π 0 π 0 π¬ 0 π 0
OneCampus
Search, Click, Done! Find what you are looking for.
Sorry about that! This is an undergrad opportunity and is open to currently enrolled students. You'll need to log in through one.purdue.edu first to access the link. Let me know if you still have trouble!
09.12.2024 22:42 β π 3 π 0 π¬ 1 π 0
Congratulations to the students from Purdue Engineering on successfully presenting their capstone project! The group worked with RCAC to develop and implement an advanced, real-time predictive maintenance system using AI and IoT sensors for RCAC's #HPC infrastructure. #TheNextGiantLeap
09.12.2024 19:09 β π 5 π 2 π¬ 1 π 1
π¨ Purdue Libraries is hiring! π¨
Looking for an undergrad to join a Gamification project this Spring! πΉοΈ
π» Skills: Unreal Engine, C++, Blueprints, GitHub
π Link to apply:
hcm-us10.hr.cloud.sap/sf/jobreq?jo...
Know someone who might be interested? Tag them! π #UnrealEngine #Gamedev #Purdue
09.12.2024 22:24 β π 13 π 6 π¬ 3 π 1
Anvil REU Applications
Application submission for the Purdue Anvil REU program.
π¨ Summer '25 Paid Internships! Join Purdueβs Anvil Research Experience for Undergraduates for hands-on experience in AI, bioinformatics, & data centers. $680/week + housing. Apply now: purdue.ca1.qualtrics.com/jfe/form/SV_... π
04.12.2024 13:46 β π 2 π 2 π¬ 0 π 0
Promotional logo for MMseqs2 16 with the MMseqs2 Rocket mascot as a smart phone like App logo
MMseqs2 Release 16 Highlights: GPU-accelerated searchπ, ORF or new 6-frame translated search modes, contig taxonomy always keeps the longest ORF, bug fixes (reduced memory and higher sensitivity) and relicensed as MIT
π biorxiv.org/content/10.1...
πΎ mmseqs.com and πBioconda π₯οΈπ§¬π§Ά
27.11.2024 09:08 β π 116 π 44 π¬ 0 π 1
Pylustrator offers an interactive interface to find the best way to present your data in a figure for publication. Added formatting and styling can be saved by automatically generated code. https://pylustrator.readthedocs.io/en/latest/ #python
26.11.2024 23:00 β π 35 π 13 π¬ 2 π 0
annoy a bioinformatician with these simple phrases:
"Can't you just use Excel?"
"Isn't BLAST basically Google for DNA?"
"But did you annotate it?"
26.11.2024 23:23 β π 1 π 1 π¬ 1 π 0
Tech I'm thankful for (2024)
Data science and bioinformatics tech I'm thankful for in 2024: tidyverse, RStudio, Positron, Bluesky, blogs, Quarto, bioRxiv, LLMs for code, Ollama, Seqera Containers, StackOverflow, ...
Tech I'm thankful for blog.stephenturner.us/p/tech-im-th... #rstats π§¬π₯οΈπ§ͺ
25.11.2024 14:29 β π 25 π 6 π¬ 1 π 0
"biology can remain hard longer than you can remain solvent"
AI-first biology: five years on https://press.airstreet.com/p/ai-first-biology-five-years-on
21.11.2024 19:30 β π 19 π 4 π¬ 0 π 0
Blackbird: structural variant detection using synthetic and low-coverage long-reads https://www.biorxiv.org/content/10.1101/2024.11.17.624011v1 π§¬π₯οΈπ§ͺ https://github.com/1dayac/Blackbird
19.11.2024 16:30 β π 18 π 5 π¬ 0 π 0
Gene prediction using Helixer β RCAC bioinformatics tutorials
π New Helixer tutorial for gene prediction! Predict genes in complex genomes like maize with 1 commandβno repeatmasking, no extra data needed, all under 4 hrs! π½π»
Check it out: rcac-bioinformatics.readthedocs.io/en/latest/he...
#Bioinformatics #Genomics #RCAC
31.10.2024 14:42 β π 6 π 3 π¬ 0 π 0
Genomics+Bioinformatics Starter Pack π§¬π₯οΈ
Join the conversation
I created a genomics+bioinformatics starter pack. If I left you off, *please* reply and I'll add you! go.bsky.app/B5YYBfq
22.10.2024 12:34 β π 176 π 106 π¬ 99 π 7
Weekly Recap (Oct 2024, part 4)
Protein design with RoseTTAFold, wastewater sequencing T2T human genomes, single-cell spatial transcriptomics, taxonomic classification, ...
This week's recap highlights protein design with RoseTTAFold, surveillance with wastewater sequencing, T2T human genomes, Vitessce for visualization of multimodal spatial single-cell data, and Taxometer for taxonomic classification of metagenomics contigs... blog.stephenturner.us/p/weekly-rec... π§¬π₯οΈ
25.10.2024 10:07 β π 6 π 4 π¬ 0 π 0
Cutting-edge research, news, commentary, and visuals from the Science family of journals. https://www.science.org
The project page for morloc, a language where you can compose functions across languages under a common type system
Our mission is to enable the promise of genomics to better human health by creating the worldβs most advanced sequencing technologies.
β οΈ A very strange game... in development.
Our mission is to advance global animal and human health and well-being.
Dad, husband, gamer, ally, inattentive ADD haver. He/him/his.
Director of Integrated Cyberinfrastructure at Purdue Universityβs Rosen Center for Advanced Computing. #hpc #supercomputing
Views my own.
HPC, ROI, workforce dev. Cat pictures.
Open source methods for #metagenomics with @martinsteinegger.bsky.social Seoul National University π°π· | former SΓΆding Lab MPI-NAT π©πͺ | http://mstdn.science/@milotmirdita
Genome annotation geek at University of Greifswald, always interested in friendly scientific collaboration. Developer of BRAKER, GALBA, MakeHub and other Gaius-Augustus tools.
Quantitative, population & evolutionary genomics. Wurdack Chair in Animal Genomics at University of Missouri.
Thoughts are my own.
New horizons. All omics. AgBio field NGS specialist. π± ππΎππ»πvegetables, field crops, berries and ornamentals. #DNA #RNA #protein
Bioinformatics Scientist / Next Generation Sequencing, Single Cell and Spatial Biology, Next Generation Proteomics, Liquid Biopsy, SynBio, Compute Acceleration in biotech // http://albertvilella.substack.com
Scientist @ISU
Bioinformatics | Deep Learning | Single Cell Tech
Bioinformatician at the Genome Informatics Facility, Iowa State University
I am a bioinformatic scientist working in the Iowa State Genome Informatics Core. Maintainer of SCNBase.org for soybean cyst nematode genomics. Science and nature are my work and my fun.
Associate Professor of Digital Biology and @royalsociety.org Wolfson Fellow at School of Life Sciences, @dundee.ac.ukβ¬. Former Group Leader at @mpi-bio-fml.bsky.social and PostDoc at @cam.ac.ukβ¬ and Trinity College Cambridge.
RCAC provides advanced computational resources and services to support Purdue faculty and staff researchers. We also conduct our own research and development to enhance the capabilities of these resources.
PhD Student researching Leptospirosis in livestock in Madagascar π²π¬ and Tanzania πΉπΏ
University of Aberdeen π΄σ §σ ’σ ³σ £σ ΄σ Ώ
Research interests: Zoonotic disease, wildlife disease, and genetics π§¬π§«π¦ π©βπ¬
