Yawako's Avatar

Yawako

@yawaguchi.bsky.social

Yawako W Kawaguchi/NIG Postdoc/BioInfomatics/Genomics/Green alga/Vertebrae Japan

27 Followers  |  23 Following  |  6 Posts  |  Joined: 04.03.2025  |  1.4462

Latest posts by yawaguchi.bsky.social on Bluesky

Did a few updates today (refresh your browser to get the latest version):

* Added a Drag nodes mode for intuitive manual repositioning
* Enabled Shift-based multi-selection
* Added Fit view, and a Tree stats panel
* Leaf sizes can now be adjusted individually
* Added horizontal scale adjustment

25.11.2025 11:54 — 👍 0    🔁 1    💬 0    📌 0

Did a few updates today (refresh your browser to get the latest version):

* Added a Drag nodes mode for intuitive manual repositioning
* Enabled Shift-based multi-selection
* Added Fit view, and a Tree stats panel
* Leaf sizes can now be adjusted individually
* Added horizontal scale adjustment

25.11.2025 11:54 — 👍 0    🔁 1    💬 0    📌 0

Did a few updates today (refresh your browser to get the latest version):

* Overall UI design tweaks
* Improved auto-scaling for nicer tree rendering
* Nodes can now have individual sizes and colors
* Leaf positions are now adjustable

20.11.2025 02:54 — 👍 0    🔁 0    💬 1    📌 0

Sure! And if you see any weird behavior or have ideas, I’d love to hear them.
I’m pretty new to building tools like this, so feedback really helps me improve it.

19.11.2025 23:36 — 👍 1    🔁 0    💬 0    📌 0

Thank you for your kind suggestion!
I just added the ability to change each node's size and color individually.
Give it a try after reloading the site!

19.11.2025 14:28 — 👍 1    🔁 0    💬 1    📌 0
Preview
PhyloWeaver – Interactive phylogenetic tree editor Edit and visualize phylogenetic trees directly in your browser. PhyloWeaver lets you interactively rearrange tree topologies and export high-quality figures for publications and presentations.

I’ve released a tool to sketch and edit phylogenetic trees!
yawak.jp/PhyloWeaver/

Load a Newick file and intuitively add/remove/resize branches.
Useful for quick conceptual trees, extracting subtrees, or turning ideas into Newick.

18.11.2025 01:59 — 👍 144    🔁 74    💬 4    📌 1

Our new study is out!

Just one episode of sexual reproduction in Closterium🌙 can create offspring with very different stress reactions compared to the parents.
This might be because of massive copy number variations in their genomes, which produce a wide range of phenotypes.

18.04.2025 08:54 — 👍 8    🔁 1    💬 0    📌 0
Preview
Nationwide diversity of symbolic “city flowers” in Japan is increasing In this study, we examined how city governments in Japan assess their local biota and their services. The groundbreaking point of our study was the use of “city flowers,” which are the official symbo....

#OpenAccess
Nationwide diversity of symbolic “city flowers” in Japan is increasing

Yoichi Tsuzuki, Haruna Ohsaki, Yawako W. Kawaguchi et al
doi.org/10.1111/1440...

awareness of local governments/ biocultural diversity/ ecosystem services/ manual web scraping/ temporal trend

07.01.2025 13:44 — 👍 3    🔁 3    💬 1    📌 1

@yawaguchi is following 20 prominent accounts