A sneak peek at what's to come for MorphoNet 👀!
New interfaces for all the main menus: better, faster, clearer!🧑‍💻 Stay tuned for more updates ! 🧬

14.10.2025 13:56 — 👍 0    🔁 0    💬 0    📌 0

Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium Summary: The use of sea star embryogenesis as a model of a proliferating epithelium to highlight how cell division induces 3D cell rearrangements during development.

We would like to thank Vanessa Barone & al. for the data provided ! Read the paper here: doi.org/10.1242/dev....
CellposeSAM paper: www.biorxiv.org/content/10.1...

08.09.2025 11:49 — 👍 0    🔁 0    💬 0    📌 0

Having difficulties segmenting your 3D🔬 datasets ? You can try the CellposeSAM plugin🧑‍💻directly in MorphoNet in one click ! No python required 😌

08.09.2025 11:49 — 👍 1    🔁 1    💬 1    📌 0

MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets

🙌We are thrilled to announce that our latest paper has been published in eLife : doi.org/10.7554/eLif...
💻Discover how MorphoNet can help you segment, curate, analyze and augment your 3D / 3D + t datasets without having to do a line of code, and much more ! 🦠

23.05.2025 08:17 — 👍 1    🔁 1    💬 0    📌 0

The team is animating a workshop in front of the QLIFE winter school attendees

👨‍🏫 We were honored to be able to host a workshop at the #QLIFE winter school @psl-univ.bsky.social @normalesup.bsky.social. Thanks to the organizers and the attendees 👨‍🎓 !

02.04.2025 11:25 — 👍 1    🔁 1    💬 0    📌 0

MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets Thanks to recent promising advances in AI, automated segmentation of imaging datasets has made significant strides. However, the evaluation and curation of 3D and 3D+t datasets remain extremely challe...

📜 All of this, and more is featured in the preprint we published, including 5 examples with varied datasets and use cases: www.biorxiv.org/content/10.1...
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !

07.03.2025 13:45 — 👍 1    🔁 1    💬 0    📌 0

What's more, you can easily view many evaluation metrics 📈, so you can assess the quality of your segmentation, and even do unsupervised quality assessment of data with no ground truth 📊 !

07.03.2025 13:45 — 👍 1    🔁 0    💬 1    📌 0

That's not all ! Having trouble fixing imprefections and issues in your segmentations ? MorphoNet is also a segmentation curation tool, and contains many image processing plugins to curate and refine your segmentations, without writing a line of code !🧑‍💻

07.03.2025 13:45 — 👍 0    🔁 0    💬 1    📌 0

🧑‍🔬Have you been looking for an efficient way to segment your 3D or 4D images 🔬 ?
MorphoNet is an open, user-friendly, interactive segmentation platform, that embarks state-of-the art tools, like Cellpose !
Download at morphonet.org

07.03.2025 13:45 — 👍 5    🔁 2    💬 1    📌 0