📣We are looking for a motivated #researcher to join the MicroscoPIA project, an ambitious interdisciplinary initiative aiming to build a next-generation intelligent microscope.
#postdoc #positionopen #microscopy #smartmicroscopy

Hi all,

Hope you're fine and safe

An important #announcement about #tyssue , a Python #epithelium modeling library :

github.com/DamCB/tyssue...

Please 🔁 this message to reach the few and far apart people that might be impacted

#openScience #scipy #biologicalphysics #modelling 🧪

🛠️ November's most-read Tools and Resources paper introduces MorphoNet 2.0 for assessment and segmentation curation of large-scale 3D time-lapse imaging datasets: buff.ly/pw1bJtp

Learn more about publishing your tools or resources with us: buff.ly/CLW7irz

Thanks to everyone involved in the platform ! @cnrsbiologie.bsky.social @cnrsinformatics.bsky.social @umontpellier.bsky.social #LIRMM @cnrsoccitanieest.bsky.social

📜We are thrilled to announce that the latest MorphoNet paper is officially published 🎉 ! Discover 5 varied use cases in which MorphoNet helps segment, curate, evaluate & validate complex 3D+t datasets, and much more 🧑‍💻 ! Read at @elife.bsky.social : doi.org/10.7554/eLif...

A sneak peek at what's to come for MorphoNet 👀!
New interfaces for all the main menus: better, faster, clearer!🧑‍💻 Stay tuned for more updates ! 🧬

Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium Summary: The use of sea star embryogenesis as a model of a proliferating epithelium to highlight how cell division induces 3D cell rearrangements during development.

We would like to thank Vanessa Barone & al. for the data provided ! Read the paper here: doi.org/10.1242/dev....
CellposeSAM paper: www.biorxiv.org/content/10.1...

Having difficulties segmenting your 3D🔬 datasets ? You can try the CellposeSAM plugin🧑‍💻directly in MorphoNet in one click ! No python required 😌

🙌We are thrilled to announce that our latest paper has been published in eLife : doi.org/10.7554/eLif...
💻Discover how MorphoNet can help you segment, curate, analyze and augment your 3D / 3D + t datasets without having to do a line of code, and much more ! 🦠

The team is animating a workshop in front of the QLIFE winter school attendees

👨‍🏫 We were honored to be able to host a workshop at the #QLIFE winter school @psl-univ.bsky.social @normalesup.bsky.social. Thanks to the organizers and the attendees 👨‍🎓 !

MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets Thanks to recent promising advances in AI, automated segmentation of imaging datasets has made significant strides. However, the evaluation and curation of 3D and 3D+t datasets remain extremely challe...

📜 All of this, and more is featured in the preprint we published, including 5 examples with varied datasets and use cases: www.biorxiv.org/content/10.1...
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !

What's more, you can easily view many evaluation metrics 📈, so you can assess the quality of your segmentation, and even do unsupervised quality assessment of data with no ground truth 📊 !

That's not all ! Having trouble fixing imprefections and issues in your segmentations ? MorphoNet is also a segmentation curation tool, and contains many image processing plugins to curate and refine your segmentations, without writing a line of code !🧑‍💻

🧑‍🔬Have you been looking for an efficient way to segment your 3D or 4D images 🔬 ?
MorphoNet is an open, user-friendly, interactive segmentation platform, that embarks state-of-the art tools, like Cellpose !
Download at morphonet.org