Genome of the green-head ant, Rhytidoponera metallica, reveals mechanisms of toxin evolution in a genetically hyper-diverse eusocial species - Genome Biology
Background While ants are textbook examples of eusocial animals in which altruistic behavior is maintained through kin selection, several ants form genetically diverse colonies that challenge this concept. One example is the Australian green-head ant (Rhytidoponera metallica) whose colonies harbor such extreme genetic variation that they have been speculated to represent an unstable form of eusociality. Yet, R. metallica is among the most successful ants on the Australian subcontinent. This success has been hypothesized to be partly due to the diverse venoms harbored within each colony. However, the genomic basis and evolutionary scenarios that maintain this toxin diversity remain unknown. Results To examine toxin genomic architecture, quantify individual-level genetic variation, and identify both proximate and ultimate mechanisms that have facilitated the toxin diversity in R. metallica, we generate a high-quality draft genome from a single worker. Most ectatotoxin genes are in clusters that contain evidence of multiple, complex gene-family expansions, some of which are likely explained by the presence of transposable elements. We also show that toxin regions of the genome exhibit elevated genetic variation despite being under strong selection and that this variation can translate to phenotypic diversity through toxin alleles with different functional properties. Conclusions Taken together, our results point to classical gene duplication and diversification as the main evolutionary mechanism by which the main toxin family in ant venoms evolves, suggest toxin-gene functional diversification under frequency-dependent selection maintains colony-level venom hypervariability in R. metallica, and provide new insight into the role of multi-level selection in eusocial animals.
New publication: "Genome of the green-head ant, #Rhytidoponera metallica, reveals mechanisms of toxin evolution in a genetically hyper-diverse eusocial species" with Isaksen, Nachtigall, Araya, Hansen & Undheim from @biovitenskap.bsky.social
Published in Genome Biology by @springernature.com
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Chromosomal Inversions Mediated by Tandem Insertions of Transposable Elements
Abstract. Chromosomal inversions play a crucial role in evolution by influencing phenotypes through the linkage of coadapted alleles. While inversions have
@robinaraya.bsky.social @naturalselection.bsky.social @kjetillsj.bsky.social et al. investigate TEs in four large inversions in Atlantic cod - TEs accumulate in breakpoints, suggesting they drive inversions through ectopic recombination.
π doi.org/10.1093/gbe/evaf131
#genome #evolution #TEsky
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A century of anthropogenic perturbations impact genomic signatures of the iconic migratory Atlantic cod
Retrospective assessment of the iconic migratory Atlantic cod uncovers human-induced genome-wide changes during the last century.
Finally is this story out public!! With an amazing historical dataset from IMR (@havforskningsinstituttet) we demonstrate how human perturbations impact the genomic signal in one of the largest cod stocks in the world: the northeast arctic cod | Science Advances www.science.org/doi/10.1126/...
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Short tandem repeats delineate gene bodies across eukaryotes
Nature Communications - Despite the abundance of simple repeats in eukaryote genomes, their spatial distribution is largely unknown across taxa. Here, the authors show that repeats accumulate...
New publication: "Short tandem repeats delineate gene bodies across #eukaryotes" with William Reinar, Anders KrabberΓΈd, Vilde Lalun @vildeol.bsky.social, Melinka Butenko @melinkab.bsky.social, Kjetill Jakobsen.
Published in Nature Communications @nature.com
www.nature.com/articles/s41...
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PhD student in Evolution of Indo-Pacific birds
The Department of Bioinformatics and Genetics is offering a four-year PhD position focused on analyzing population-level genomic data from museum bird samples. The project will employ cutting-edge gen...
[please share widely!]
We have two PhD positions available at the Swedish Museum of Natural History:
[Position 1] Birds, hybridization, genomes, island biology, biogeography, sexual selection π¦, w/ me, Knud JΓΈnsson, Martin Iredstedt and @stelkens.bsky.social et al
recruit.visma.com/spa/public/a...
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π¨ Revolutionising Snakebite Treatments with AI-Designed Proteins π
I'm proud to share our latest study published in hashtag#Nature, driven by Susana Vazquez Torres, and co-led by David Baker (Institute for Protein Design, University of Washington) and myself.
15.01.2025 20:16 β π 27 π 11 π¬ 2 π 2
Ops - forgot the key words: #TEsky #Transposable #TEs #repeats #genome #genomics
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Chromosomal inversions mediated by tandem insertions of transposable elements https://www.biorxiv.org/content/10.1101/2025.01.09.631634v1
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βA place of joyβ: why scientists are joining the rush to Bluesky
Researchers say the social-media platform β an alternative to X β offers more control over the content they see and the people they engage with.: https://www.nature.com/articles/d41586-024-03784-6
There are already many articles for which there is more attention on Bluesky than on other comparable micro-blogging sites, meaning the academic community and the general public have clearly adopted Bluesky as one of its core places to disseminate and discuss new research.
A Place of Joy.
03.12.2024 14:00 β π 2524 π 674 π¬ 49 π 102
Dry shipper! I've flown with one within Europe. I recommend getting a backpack for it, as the larger ones can be quite difficult to carry.
21.11.2024 09:01 β π 1 π 0 π¬ 0 π 0
π Consistent accumulation of transposable elements in species of the Hawaiian Tetragnatha spiny-leg adaptive radiation across the archipelago chronosequence
www.biorxiv.org/content/10.1...
Thread!
04.01.2024 18:37 β π 6 π 4 π¬ 1 π 1
Evolutionary zoology & quantitative genetics
Biology Professor, New York University
Evolutionary biologist, Inst. Evol. Biol. (CSIC, Barcelona). Invertebrate genomics, trying to understand how animals colonised land (and also caves). www.metazomics.com
EMBL's European Bioinformatics Institute (EMBL-EBI) provides open biological data resources and tools, and performs basic research in computational biology. https://www.ebi.ac.uk/
Our objective is to provide training in the fields of genomics, population genetics and phylogenomics.
GIGA is a worldwide collaborative network of researchers working to address the challenges of genome sequencing across the wide span of invertebrate taxonomy and research disciplines. http://www.gigacos.org/
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Evolutionary biologist, gene expression evolution, population genetics and fireflies
Professor & Biotech Entrepreneur
Antibody discovery | Toxinology | Snakebite envenoming | Infectious diseases | Microbiome | Antimicrobial resistance
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Evolutonary Marine Venom Biologist
Currently at Ohio State University -> postdoc @ Harvard OEB.
Incoming assistant professor at MSU IBIO. Postdoctoral Researcher in the Kelley Lab at UC Santa Cruz. Functional and evolutionary genomics. π»ππ§¬
Website: blairperry.net
Venoms and toxin researcher studying molecular basis of toxin resistance. Former arachnophobe turned spider advocate. Current postdoc at UCSF. PhD at UQ. π¦πΊ in πΊπΈ
The Earth BioGenome Project (EBP), a moonshot for biology, aims to sequence, catalog, and characterize the genomes of all of Earth's eukaryotic biodiversity over a period of ten years.
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The goal of the Canadian BioGenome Project is to produce high-quality reference genomes 𧬠for all Canadian species π
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A comedyish science podcast hosted by @alieward. Asking smart ologists not-smart questions about their professional obsessions. Every Tuesday. May be NSFW. https://linktr.ee/alieward
Bloomberg Distinguished Professor of BME, CS, and Biostats at Johns Hopkins Univ., tennis player, @StevenSalzberg1 on Twitter, lab: salzberg-lab.org, Substack blog: stevensalzberg.substack.com
Group leader and Royal Society URF @Wellcome Sanger Institute
Branco Weiss fellow @University of Cambridge
speciation, genomics, hybridisation
Professor at Florida State University. I study the things with too few/many legs.