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Pierre Bourguet

@p-bourguet.bsky.social

Biologist studying transposons, gene regulation and chromatin in the Jullien group. Postdoc @ IBMP (Strasbourg, France). @ibmp-cnrs.bsky.social

618 Followers  |  376 Following  |  34 Posts  |  Joined: 16.11.2024  |  1.801

Latest posts by p-bourguet.bsky.social on Bluesky

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A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species - Genome Biology Background The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variabil...

πŸš¨πŸ“’πŸ“„ Article in press in Genome Biology doi.org/10.1186/s130...
We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky πŸ§΅πŸ‘‡

16.02.2026 08:38 β€” πŸ‘ 38    πŸ” 31    πŸ’¬ 1    πŸ“Œ 1
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A small polymerase ribozyme that can synthesize itself and its complementary strand The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...

How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller?

Excited to share our latest work in @science.org on a new small polymerase.
1/n

13.02.2026 11:42 β€” πŸ‘ 473    πŸ” 195    πŸ’¬ 9    πŸ“Œ 25

Check out this story by Handler, Brennecke et al. on how the piRNA pathways distinguish transposable element transcripts. Beautiful work!

13.02.2026 15:46 β€” πŸ‘ 10    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Thrilled to announce I've been awarded a Marie SkΕ‚odowska-Curie Postdoctoral Fellowship! πŸ‡ͺπŸ‡Ί I'll be joining @pejullien.bsky.social's group at @ibmp-cnrs.bsky.social in Strasbourg. Excited for what's ahead! πŸŽ‰

11.02.2026 12:38 β€” πŸ‘ 25    πŸ” 1    πŸ’¬ 6    πŸ“Œ 0

This week in @science.org, a celebration of plant pangenomes. A pangenome analysis for massively polyploid sugarcane species, and one for Brassica rapa giving insight into subspeciation.

What's all the fuss about pangenomes? Pamela and Douglas Soltis explore this in an insightful Perspective(1/4)

06.02.2026 09:57 β€” πŸ‘ 30    πŸ” 17    πŸ’¬ 1    πŸ“Œ 0
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The Centre for Research in Cellular Biology of Montpellier (CRBM) is recruiting Junior / Senior Group Leaders - FocalPlane The Centre for Research in Cellular Biology of Montpellier (CRBM) is recruiting Junior / Senior Group Leaders to shape its research in the coming decade

'The Centre for Research in Cellular Biology of Montpellier (CRBM) is recruiting Junior/Senior Group Leaders to shape its research in the coming decade.
The deadline for application is 31st of March 2026.'
#sciencejobs
focalplane.biologists.com/cell-biology...

04.02.2026 11:52 β€” πŸ‘ 13    πŸ” 12    πŸ’¬ 0    πŸ“Œ 0
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Here we go again! Join us in Vienna, May 21–22, for two days of plant scienceβ€”talks, discussions, and celebration of what makes plants both beautiful and essential πŸ’šFull program + registration here: www.oeaw.ac.at/gmi/news-eve...
Come be part of it β€” each of you counts!

27.01.2026 12:13 β€” πŸ‘ 23    πŸ” 13    πŸ’¬ 0    πŸ“Œ 1
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I am excited to offer a postdoctoral research position in my lab in Oxford studying the distribution of small RNAs during plant sexual reproduction. shorturl.at/7Goxt
Reposts appreciated!
Obligatory cat video to brighten your day. :-)

26.01.2026 16:31 β€” πŸ‘ 154    πŸ” 87    πŸ’¬ 4    πŸ“Œ 4
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πŸ“’ Three new #bioRxiv preprints from our team on holocentric chromosomes.

Together, they connect centromere repeat evolution, karyotype dynamics, and meiotic recombination outcomes, revealing how holocentric genomes evolve and function. πŸ§¬πŸ‘‡

21.01.2026 14:45 β€” πŸ‘ 56    πŸ” 36    πŸ’¬ 4    πŸ“Œ 2
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Dominant contribution of Asgard archaea to eukaryogenesis - Nature A survey of the reconstructed gene set of the last eukaryotic common ancestor shows a consistent link between Asgard archaea and the origin of numerous, functionally diverse eukaryotic genes, dem...

Dominant contribution of Asgard archaea to eukaryogenesis.

tldr; Best guess, ~ 50% of conserved eukaryotic protein families are from from Asgard archaea!

#science #biology #evolution #nature #bioinformatics

www.nature.com/articles/s41...

18.01.2026 14:24 β€” πŸ‘ 33    πŸ” 16    πŸ’¬ 2    πŸ“Œ 1
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After a short break in our webinars we are delighted to be back up & running this month!

First up, on Jan 30th we will be joined by @lucas.farnunglab.com from @harvardmed.bsky.social πŸ”¬

Shortly after, on Feb 13th we will be hosting @heardlab.bsky.social from @crick.ac.uk 🧬

Registration details πŸ‘‡

15.01.2026 14:59 β€” πŸ‘ 11    πŸ” 6    πŸ’¬ 1    πŸ“Œ 5
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The (Yoav) Voichek lab has opened its gates at the Weizmann Institute, and is actively recruiting students and researchers at all levels - come explore gene regulation and computational genomics in a fun, friendly sprouting lab πŸ€—πŸ₯Όβš—️πŸ§ͺ
www.weizmann.ac.il/plants/voichek

11.01.2026 20:41 β€” πŸ‘ 45    πŸ” 31    πŸ’¬ 0    πŸ“Œ 0
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Pervasive cis-regulatory co-option of a transposable element family reinforces cell identity across the mouse immune system Transposable elements (TEs) make up about half of the human and mouse genomes and play important regulatory roles in immune responses. However, the cis -regulatory contribution of TEs to immune cell d...

New Year, New Paper!🎊

Pervasive cis-regulatory co-option of a transposable element family reinforces cell identity across the mouse immune system
www.biorxiv.org/content/10.6...

Centerpiece of Jason Chobirko's PhD, talented PhD student co-mentored by Andrew Grimson & me. Really excited about it!🧡

07.01.2026 19:45 β€” πŸ‘ 54    πŸ” 18    πŸ’¬ 1    πŸ“Œ 2
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Blinded by the lights? Re-examining the adaptive role of transposable elements in plants with population genomics Transposable elements (TEs) are ubiquitous components of the genome whose mobility can be triggered by environmental stress and influenced by genotype…

Have we been overstating the role of transposable elements in adaptation to local or rapidly changing environmental conditions? Happy to share my (somewhat unpopular?) opinion paper on this matter: www.sciencedirect.com/science/arti...
Thanks to those who already shared the link!

05.01.2026 09:02 β€” πŸ‘ 38    πŸ” 32    πŸ’¬ 2    πŸ“Œ 1
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REFEREE 1: β€œI conclude with a simple, direct statement - this is the best paper I have read all year!”
#TransparentPeerReview

Co-evolving infectivity and expression patterns drive the diversification of endogenous retroviruses
@juliusbrennecke.bsky.social et al

www.embopress.org/doi/full/10....

06.06.2025 14:18 β€” πŸ‘ 116    πŸ” 38    πŸ’¬ 3    πŸ“Œ 3

Intrigued by a long-standing conundrum in small RNA biologyβ€”how nuclear Argonaute proteins silence transposons when they *need* target transcription for their own recruitmentβ€”we studied the piRNA pathway.

And found a hidden RNA-decay axis from Piwi to the RNA exosome.

22.12.2025 18:14 β€” πŸ‘ 96    πŸ” 42    πŸ’¬ 3    πŸ“Œ 5
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Applications for our international #PhD program open until 11th Jan. Come work with us @uoe-igc.bsky.social and @hannahlong.bsky.social to understand DNMT3B in ICF syndrome or with our wonderful colleagues.
Details here:
institute-genetics-cancer.ed.ac.uk/igc-graduate...
#epigenetics Please repost πŸ™

19.12.2025 10:31 β€” πŸ‘ 11    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
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Evaluating the effects of archaic protein-altering variants in living human adults Promise and pitfalls of using large biobanks to study impacts of archaic protein-coding variants in living humans.

While stories of singular DNA changes that drove evolution of human brain/behaviour remain seductive, advances across multiple fields of biology cast doubt on such simplistic narratives of our origins. A new paper from my lab shows how biobanks may speak to this fundamental question.πŸ§ͺ
ExplainerπŸ§΅πŸ‘‡1/n

18.12.2025 13:51 β€” πŸ‘ 116    πŸ” 50    πŸ’¬ 4    πŸ“Œ 14

Closing out my year with a journal editor shocker 🧡

Checking new manuscripts today I reviewed a paper attributing 2 papers to me I did not write. A daft thing for an author to do of course. But intrigued I web searched up one of the titles and that's when it got real weird...

19.12.2025 17:20 β€” πŸ‘ 2376    πŸ” 1225    πŸ’¬ 68    πŸ“Œ 357
Position du lever du soleil en fonction des saisons

Position du lever du soleil en fonction des saisons

Aujourd'hui c'est le solstice d'hiver dans l'hémisphère Nord. Les journées vont commencer à rallonger! Le soleil ne se lève à l'Est (centre de l'image avec Nord à gauche, Sud a droite) que lors des équinoxes. La position du lever change un peu tous les jours! (©Z. Al-Abbadi)

21.12.2025 08:48 β€” πŸ‘ 969    πŸ” 260    πŸ’¬ 16    πŸ“Œ 11
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1/ I’ve reviewed hundreds of bioinformatics GitHub repos in my career.
Here’s the brutal truth: most tool documentation fails the people it’s meant to help.
And it’s not because the algorithms are bad.

14.12.2025 14:15 β€” πŸ‘ 17    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
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Have you ever wondered how new DNA methylation patterns are established?

Paradigm shift ahead! We discovered a new mode of DNA methylation targeting in plants that relies on transcription factors and sequence motifs rather than chromatin modifications to regulate the methylome. rdcu.be/eQ6L5
1/8

11.12.2025 21:56 β€” πŸ‘ 47    πŸ” 23    πŸ’¬ 2    πŸ“Œ 0
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SET1/MLL complexes control transcription independently of H3K4me3 Histone H3 lysine 4 trimethylation (H3K4me3) at gene promoters is thought to play a central role in gene transcription. H3K4 methylation is deposited by the SET1 (A/B) and MLL (1-4) multi-protein comp...

An early Christmas present for those interested in chromatin and transcription! Fantastic work from @au-ho-yu.bsky.social and @aleksszczurek.bsky.social . Thanks to Inge and Michiel for their help. Please repost!

www.biorxiv.org/content/10.6...

11.12.2025 06:09 β€” πŸ‘ 133    πŸ” 65    πŸ’¬ 10    πŸ“Œ 6
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Transposable elements can insert into genes, disrupting protein-coding potential. Researchers discover a mode of RNA processing, β€˜SOS splicing’, that provides a quick fix @nature.com @harvardmed.bsky.social
www.nature.com/articles/d41...
www.nature.com/articles/s41...

10.12.2025 19:03 β€” πŸ‘ 25    πŸ” 14    πŸ’¬ 0    πŸ“Œ 2

Great news, congratulations!

09.12.2025 17:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Looking for a postdoc in computational biology? We are looking for a postdoc candidate apply for the fellowship 'Juan de la Cierva' for a project on long-read transcriptomics, multiomics, spatial transcriptomics, single-cell long-reads. Deadline is approaching!! (December 10th)

08.12.2025 12:06 β€” πŸ‘ 4    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0
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Creation of new junior research groups at the Institut Pasteur - Call for applications 2026 - Research The Institut Pasteur is launching an international call to recruit new junior research group leaders leveraging cutting-edge transdisciplinary approaches to exploring infectious diseases, host-microbe...

πŸ”¬ Call to create junior research groups at the Institut Pasteur

Focus: Infectious diseases, host-microbe interactions, vaccines
Special interest: AI methodologies

πŸ“… Deadline: Feb 9, 2026
πŸ‘₯ 2-12 years post-PhD

Apply now πŸ“ research.pasteur.fr/en/call/crea...

#JobOpportunity #Research

08.12.2025 08:53 β€” πŸ‘ 99    πŸ” 137    πŸ’¬ 1    πŸ“Œ 9
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Congratulations the first story from your lab Marco! To all co-authors and to Gesa for the stunning pictures 😍

02.12.2025 15:42 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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AGO5 restricts virus vertical transmission in plant gametophytes The propagation of a viral infection from a host parent to its progeny is known as vertical transmission, or seed transmission in plants. It allows viral infections to rapidly spread locally via polle...

Preprint alert! It is my great pleasure to announce the first manuscript from the lab, a story that started @gmivienna.bsky.social and was mainly accomplished by the intrepid @gesahoffmann.bsky.social at @mpi-mp-potsdam.bsky.social. A brief thread with our findings
www.biorxiv.org/content/10.1...

02.12.2025 12:34 β€” πŸ‘ 77    πŸ” 37    πŸ’¬ 2    πŸ“Œ 2

Have you ever wondered how it is possible that systemically infected plants produce (a certain percentage of) healthy progeny? πŸ’š

Check out the first preprint of the @incavirus.bsky.social lab and first preprint of my postdoc! πŸ€

We'd be very happy about feedback and discussions!

02.12.2025 13:34 β€” πŸ‘ 41    πŸ” 14    πŸ’¬ 2    πŸ“Œ 0

@p-bourguet is following 20 prominent accounts