scODIN is more accurate and faster than any method published so far, and for the first time able to identify transitional cell states (e.g. the state between a naïve cell and a central memory cell) and dual cell states (e.g. Th1/Th17 or Tfh/Th17), thus enabling discovery of new biology.
25.02.2025 11:41 — 👍 0 🔁 0 💬 0 📌 0
Struggling with immune cell annotations in scRNAseq data? If so, check out our new preprint. The scODIN algorithm uses an "informed holistic" approach combining expert knowledge with machine learning to rapidly assign cell type IDs to large scRNA-seq dataset. www.biorxiv.org/content/10.1...
25.02.2025 11:40 — 👍 3 🔁 0 💬 1 📌 0
Excited to see our new single cell immunology tool out now in @naturecomms.bsky.social. We made "Single cell suppression profiling of human regulatory T cells" to generate a human model to screen for cell-type specific effects on all immune cells simultaneously.
www.nature.com/articles/s41...
20.02.2025 10:50 — 👍 12 🔁 4 💬 0 📌 1
Group leader at Karolinska Institute/SciLifeLab. Interested in genome evolution and functionality, regulatory transcriptomics, translation efficiency.
Postdoc at the Max Planck Institute for Multidisciplinary Sciences. Former MSC fellow. Interested in ribosome, translation, ncRNA, DNA replication, microbiology.
Immunology, Cancer Biology, Microphysiological Systems, Biomaterials.
Ass. Prof. Uppsala University & SciLifeLab.
Scientist, alternative music enthusiast, football lover, living in Stockholm
Head of the Systems Biology and Genomics Lab at the Harry Perkins Institute of Medical Research, University of Western Australia
#FANTOM5 #transcriptomics #spatial #cellcommunication #ovariancancer #bioinformatics #singlecell
Group leader at KTH Royal Institute of Technology & SciLifeLab, Stockholm. Sequencing-based molecular imaging, spatial networks, & DNA computing. https://hoffeckerlab.com/
Emmy Noether Research Group Leader @University of Tübingen | ex StanfordMed
https://theWimmersLab.com
Fascinated by the human immune system, multi-omics + AI, and robots!
Pharmacology • Neuroscience • Ethics • Clinical Trials • Public Health • SciComm • SciArt • Yoga
Posts are mine, not my employer’s.
