GENCODE - The GENCODE Primary transcript set
The GENCODE Primary dataset is now displayed by default for human and mouse in @ensembl.bsky.social. More information about how this set is created is available here: www.gencodegenes.org/pages/gencod... and details on how to change the default display settings here: www.ensembl.info/2025/04/29/d...
08.05.2025 09:13 β π 3 π 2 π¬ 0 π 0
GENCODE - Home page
The latest human GENCODE releases for Human (48) and Mouse (M37), have just been released. They're available via gencodegenes.org and visible in @ensembl.bsky.social genome browser as part of Ensembl 114 ensembl.org
08.05.2025 09:13 β π 2 π 4 π¬ 1 π 0
Gene: BSN (ENSG00000164061) - Summary - Homo_sapiens - Ensembl genome browser 113
Can also confirm that intron in 3' UTR does not exclude from MANE consideration - see e.g. BSN (www.ensembl.org/Homo_sapiens...) but for such cases we require evidence of NMD avoidance/functional product in the event of NMD. 2/2
11.12.2024 14:13 β π 1 π 1 π¬ 0 π 0
@nickywhiffin.bsky.social - HAVANA group here - sorry no reference comes immediately to mind. But we'll do some digging as its a good question! As @iansudbery.bsky.social says, assumption has been that introns in UTR are no different to introns in CDS. 1/2
11.12.2024 14:13 β π 3 π 2 π¬ 1 π 0
βDark proteomeβ survey reveals thousands of new human genes
Database confirms that overlooked segments of the genome code for a multitude of tiny proteins
Do you want to go further with your proteomics? Looking for something new in cancer?
Check out microproteins!
Thanks to @science.org for featuring this work, in collaboration with @sebastiaanvheesch.bsky.social, #HUPO, @gencodegenes.bsky.social
www.science.org/content/arti...
π microprotein
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26.11.2024 18:05 β π 61 π 16 π¬ 3 π 1
GENCODE 2025: reference gene annotation for human and mouse
Abstract. GENCODE produces comprehensive reference gene annotation for human and mouse. Entering its twentieth year, the project remains highly active as n
We're pleased to share our GENCODE 2025 NAR database paper: tinyurl.com/3etnfw4j Thanks to all our collaborators, friends and users. This is now the main citation for our resource, and hopefully also a good explanation of how and why we do what we do.
21.11.2024 11:21 β π 10 π 4 π¬ 0 π 0
GENCODE - Home page
The GENCODE manual annotation team, part of the Ensembl group at the EMBL-EBI. See our website for our latest gene annotations: www.gencodegenes.org
13.11.2024 14:58 β π 3 π 2 π¬ 0 π 0
The UCSC Genome Browser is a public, freely available, open-source web-based graphical viewer for displaying genome sequences and their annotations.
Immigrant scientist, genes etc @ EMBL-EBI
InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites.
ebi.ac.uk/interpro/
We develop (non-coding) RNA therapeutics for incurable diseases using genomics and bioinformatics. PI: Rory Johnson
Interested in genomics, RNAs and lncRNAs, genome regulatory elements. Labs at the Human Technopole in Milan and RIKEN in Yokohama. Hobbies include football (intended as soccer or calcio) and other sports.
Bloomberg Distinguished Professor of BME, CS, and Biostats at Johns Hopkins Univ., tennis player, @StevenSalzberg1 on Twitter, lab: salzberg-lab.org, Substack blog: stevensalzberg.substack.com
Collaborative, customizable, and scalable graphical genome annotation
The go-to hub of genetics and genomics information, with interactive and practical resources.
Your Genome is produced by @engagewcs.bsky.social and the Wellcome Sanger Institute @sangerinstitute.bsky.social.
https://www.yourgenome.org/
Embedding Genomics into routine clinical care, delivering faster & more accurate diagnoses, personalised treatment & prevention.
Web: https://ney-genomics.org.uk
Podcast: https://ney-genomics.org.uk/about-genomics/podcast/
A reviews journal from Cell Press that fosters an appreciation for advances being made on all fronts of genetic research.
Editor: Maria Smit
https://www.cell.com/trends/genetics/home
APPRIS database and webserver updates, announcements and new releases.
APPRIS: https://appris.bioinfo.cnio.es/#/
We are part of @connectingscience.bsky.social and the Wellcome Sanger Institute sangerinstitute.bsky.social. We work with a diverse range of communities, learners, educators, and researchers.
https://www.wellcomeconnectingscience.org
The Ensembl project seeks to enable genomic science by providing high-quality, integrated annotation.
Vertebrates: www.ensembl.org
Non-vertebrates: www.ensemblgenomes.org
You can test the new Ensembl browser and share your feedback at beta.ensembl.org
Bioinformatics, RNA, benchmarking & educating to fund kayaking and fishing. Εtepoti/Dunedin, Aotearoa/New Zealand. From WhΔngΔrΔ.
The only worldwide authority providing unique names to human genes
Childhood cancer immunotherapy, Microproteins, RNA translation, new ORFs & antigens, lncRNAs
PI @Princess MΓ‘xima Center for Pediatric Oncology
and @Oncode Institute. Vice-chair Therapeutic Vaccines @Oncode Accelerator.
Personal account - he/him/his
Berkeley professor (Bioeng, Compbio). Visiting Scientist at Calico. JBrowse genome browser / Apollo annotation editor, ML for gene regulation / molecular evolution / synbio. Occasional music, games, jokes
Just another LLM. Tweets do not necessarily reflect the views of people in my lab or even my own views last week. http://rajlab.seas.upenn.edu https://rajlaboratory.blogspot.com
Chief Science and Strategy Officer, openRxiv. Co-Founder, bioRxiv and medRxiv.
Asst Prof of Pharmaceutical Sciences #UCIrvine | Studying #microprotein and #peptide biology in cancer and metabolism | #FirstGen | #LAnative | π΅πΈπ²π½-πΊπΈ | formerly @tfmphd on the birdapp | https://faculty.sites.uci.edu/martinezlab/
