@pathogenomics.bsky.social
PathoGenOmics research group at I2SysBio. Having fun learning how pathogens evolve.
El #I2SysBio (@csic.es - @uv.es) ha lanzado una serie de vídeos sobre los diferentes grupos de investigación en este centro. El nuevo video es sobre el grupo Orquestación transcripcional del metabolismo vegetal de Tomas Matús @jtmatus.bsky.social
🎥🌐 youtu.be/43V4MOtAf4k?...
🧪🧬🖥️ 🌾🌱🍇 #plantscience
Spanish Society Evolutionary Biology meeting January 2026 in the botanical Garden @uv.es in Spain. Registration 200-350€. Preliminary program with confirmed keynote speakers: sesbe2026.es/programme/. Abstract submission until September 15th. sesbe2026.es/abstract/. Come to Valencia and join us!
14.07.2025 11:05 — 👍 1 🔁 1 💬 0 📌 0
VIPERA v1.2.1 is here!! 🐍🐍🐍
Our workflow for SARS-CoV-2 intra-patient evolution analysis now fully supports Snakemake 8/9 (with dedicated CI tests), BIONJ trees, richer reports, added config parameters, modular Snakefiles and more! 🧪👉 github.com/PathoGenOmics-Lab/VIPERA
@ahmig.es presented the poster "Expanding the scope of evolution reporting and analysis: from intra patient dynamics to outbreaks" at MCEB 2025 in Granada thanks to the funding @bcbhubcsic.bsky.social and @ageinves.bsky.social.
27.05.2025 10:12 — 👍 0 🔁 0 💬 0 📌 0
A photo of a group of people with the Alhambra in the back
Just back from MCEB 2025 in Granada! I presented our year-long work expanding VIPERA🐍 to help us better track pathogen evolution, here at @pathogenomics.bsky.social - @i2sysbio.bsky.social. I learned so much and returned full of ideas! Thanks to @bcbhubcsic.bsky.social for funding my attendance! 🧪
20.05.2025 14:54 — 👍 12 🔁 1 💬 1 📌 2Today, I2SysBio researchers were busy with #scienceoutreach activities at #Expociencia. Here are photos of the Pathogenomics lab @pathogenomics.bsky.social explaning in a playful way how our immune system works 🧬🖥🦠🧫🧪
10.05.2025 19:25 — 👍 5 🔁 2 💬 0 📌 0
Nuestro 4to año superado con creces, #expociencia2025 @pathogenomics.bsky.social @i2sysbio.bsky.social
10.05.2025 19:17 — 👍 4 🔁 1 💬 1 📌 1
🔬 Beca JAE Intro en Bioinformática
Desarrolla HaploScope, una pipeline híbrida (Illumina + Nanopore/PacBio) para reconstrucción de haplotipos bacterianos y virales en @i2sysbio.bsky.social
Código: JAEINT25_EX_1603
🗓️ Solicita hasta 2 mayo
🔗 rb.gy/c6c8p2
#Bioinformática #Nextflow #JAEIntro #CSIC #TFM
HubBCB-01 @CSIC.es. Impacto del microbioma respiratorio humano en la introducción de un nuevo patógeno. IP Mireia Coscolla (I2SYSBIO, Valencia) Cinco meses, cinco mensualidades de 600€, 20 horas/semana. Nota media de grado al menos 7. Si grado terminado, matriculado master bioinformática o similar.
25.03.2025 09:46 — 👍 4 🔁 3 💬 0 📌 1
Today: Online link for World TB Day symposium 9-5 GMT: lshtm.zoom.us/j/92519123639. Programme information at ucl.ac.uk/tb/events/wo...
24.03.2025 08:28 — 👍 3 🔁 3 💬 0 📌 0🧬 Estudiamos la genética tras la compatibilidad patógeno-hospedador en tuberculosis (laboratorios BSL2/BSL3). Dale play al vídeo: ¡que lo contagioso sea la ciencia! #EndTB #DíaMundialTuberculosis, Desde @csic.es, @ptisg.bsky.social, @i2sysbio.bsky.social y @paururo.bsky.social
24.03.2025 09:45 — 👍 2 🔁 2 💬 0 📌 0
🦠 ¿Amigos o enemigos? La infección por tuberculosis depende de la compatibilidad patógeno-hospedador. Si encajan bien, la bacteria prospera; si no, fracasa. ¡Cuestión de genética! #EndTB #DíaMundialTuberculosis
24.03.2025 09:42 — 👍 3 🔁 1 💬 1 📌 0
🦠 Friends or foes? Tuberculosis infection depends on host-pathogen compatibility. If they're genetically compatible, bacteria thrive; if not, they fail. It’s all about matching genes! #EndTB #WorldTBDay
24.03.2025 09:41 — 👍 1 🔁 0 💬 0 📌 0🔬 On World TB Day, we show you how we study tuberculosis genomes safely in BSL2/BSL3 labs to understand and stop its spread. Hit play—spread science, not TB! #EndTB #WorldTBDay @i2sysbio.bsky.social & @paururo.bsky.social,
24.03.2025 09:35 — 👍 4 🔁 2 💬 0 📌 0Visit to I2SysBio by ESTALMAT, the programme of mathematical talent promotion www.i2sysbio.es/communicatio...
03.03.2025 13:07 — 👍 2 🔁 1 💬 0 📌 0
#ESTALMAT is a project of the Spanish Royal Academy of Sciences @raciencias.bsky.social for detection and encouragement of mathematical talent in 12-13 years old students. They visited our research institite to learn about #DNA 🧪💻🧬 #outreach @javierbuceta.bsky.social @pathogenomics.bsky.social
23.02.2025 18:54 — 👍 7 🔁 5 💬 0 📌 1
Check out our tools for genomic analisis at github.com/PathoGenOmic...
• get_MNV: Reclassifies SNVs as MNVs and predicts amino acid changes.
• snpick: SNP extraction for large alignments.
• VIPERA: Workflow for SARS-CoV-2 evolution.
• mycolorsTB: R color palette for M. tuberculosis.
And PathoGenOmics lab re-publish a video interview highlighting the problem of drug resistance in Mycobacterium tuberculosis
youtu.be/VqSWUJmP01w
I2SysBio joins World Antimicrobial Resistance Awareness Week
www.uv.es/institute-in...
New bioinformatic tool SNPick for detection of SNPs developed at @i2sysbio.bsky.social @pathogenomics.bsky.social 🦠🔬🧫🧬🖥
20.11.2024 17:27 — 👍 2 🔁 1 💬 0 📌 0
