Daan Speth

Two full-time positions | Bioinformatician (m/f/d) + Applications Specialist (m/f/d) - Molecular Biology The Genome Facility at the Max Planck Institute for Evolutionary Biology in Plön is seeking to fill two positions (full time) to support and expand our core facility services.

Two new positions are available at the MPI for Evolutionary Biology to support development of our genomics facility. Both stand to become permanent. Both offer a ton of opportunity to engage in a wide range of creative science.

Pls repost 🙏

www.evolbio.mpg.de/3838377/job_...

Interested in a tenure track position teaching and doing research with undergrads at a PUI? We are looking for a broadly-defined microbiologist who can teach Med Micro and Immunology. Apply at universityofscrantonjobs.com/postings/8308. Pls share widely to feeds (& on twitter if you still tweet)! 🦠

Updated Genomes Terminology! “Representative Genome” is Replaced with “Reference Genome” - NCBI Insights NCBI is streamlining the terminology around our reference genomes. We currently have a small set of genomes collectively called representatives and an even smaller set called references. We have slowl...

To maybe spare someone else the headache I just went through trying to figure out why I couldn’t find any NCBI assembly tables letting me parse by “representative” genomes, they purged the term last year and solely use “reference” now. #MicroSky

Open Rank Faculty Position on the Tenure Track - Newark, New Jersey (US) job with Rutgers | 12844885 MULTIPLE TENURE-TRACK FACULTY POSITIONS AVAILABLE The Dept. of Microbiology, Biochemistry, and Molecular Genetics at Rutgers New Jersey Medical School

Rutgers Newark is hiring multiple new profs who work in microbial pathogenesis, structural bio, human/microbial genetics, genomics, biochemistry, or computational biophysics. I loved doing my PhD at Rutgers and I LOVE New Jersey. Reach out if you’re applying and have questions about the school/area.

Professor or Associate professor (Tenure Track/Full) in Microbial Genetics of Health - Turun yliopisto - Työpaikat - Duunitori Avoin työpaikka: Professor or Associate professor (Tenure Track/Full) in Microbial Genetics of Health - Turun yliopisto, Turku. Duunitorilla lisäksi yli 30 000 muuta avointa työpaikkaa. Lue lisää nyt!

Professor (full) or Associate Professor (tenure track) in Microbial Genetics of Health (U. Turku Finland). Competitive starting package included! Please share.

duunitori.fi/tyopaikat/ty...

EXCITING NEWS!! We're searching for a new professor colleague at the Biozentrum🇨🇭. Ideal candidates are exploring novel biological questions with structure, biophysics, or high-resolution imaging. 🧪 🧶🧬 🔬

The call closes Nov 3. Please get in touch if you would like more information. Come join us! 👩‍🔬🤓

New article on equitable reuse of public sequencing data, published in @natmicrobiol.nature.com!
Led by the Data reuse core team @lhug.bsky.social @environmicrobio.bsky.social Cristina Moraru, @geomicrosoares.bsky.social, @folker.bsky.social and with Anke Heyer and The Data Reuse Consotrium!

A roadmap for equitable reuse of public microbiome data - Nature Microbiology In this Consensus Statement, a consortium of microbiome scientists discuss current sequencing data sharing policies and propose the use of a Data Reuse Information (DRI) tag to promote equitable and collaborative data sharing.

Our article on equitable reuse of public sequencing data is out! Led by @alexjprobst.bsky.social, @lhug.bsky.social, Cristina Moraru, @geomicrosoares.bsky.social, @folker.bsky.social and myself -, co-authored by Anke Heyder, and developed in consultation with 167 scientists. tinyurl.com/n6yeanmk

Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?

Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

Dual transposon sequencing profiles the genetic interaction landscape in bacteria Gene redundancy complicates systematic characterization of gene function as single-gene deletions may not produce discernible phenotypes. We report dual transposon sequencing (dual Tn-seq), a platform...

Dual transposon sequencing profiles the genetic interaction landscape in bacteria | Science www.science.org/doi/10.1126/...

Microbiology and Immunology – Faculty Position (Ladder Rank) – Assistant Professor University of California, San Francisco is hiring. Apply now!

Our Department of Microbiology & Immunology at UCSF is running a faculty search this year for a new Assistant Professor! Please see the ad below for details. Searching for a great colleague, mentor, and scientist!
aprecruit.ucsf.edu/JPF05807

OK, here it is. Come work with me at the University of Liverpool making ALL THE AI models from ALL THE prokaryote pangenome data. Heck, we will make models from ALL the pangenomes, even eukaryotes!!! (link below👇) 1/4

HHMI adopts Plan U journals.plos.org/plosbiology/...

#PhyKIT now supports Python 3.12 and 3.13.

#Optimizations are also included in the latest release -- more details to come :)

Faculty Professor Associate - Full-Time | Vaughn Cooper We are recruiting Faculty microbiologists in three (3) different, complementary, and collaborative areas at the University of Pittsburgh associated with the School of Medicine. 1) Fundamental researc...

🚨 Microbiologists! We are recruiting Assistant / Associate Professors in 3 collaborative areas of our U. Pittsburgh School of Medicine.
1) MMG (my dept): fundamental research in med micro
2) Peds ID / I4Kids institute
3) Center for Vaccine Research
🔗 to all 3 w/info: www.linkedin.com/posts/vaughn...

Poster showing the following text: PhD in microbial mechanisms of soil carbon cycling. Soil microbes shape the global carbon cycle in life and death. We study the effect of aboveground land management on belowground soil carbon cycling processes. We aim create a scalable understanding of microbial processes from single cells to populations to communities to ecosystems. Pictures with text: peatland restoration, sustainable agriculture and woodland regeneration.

📢 Funded PhD opportunities for UK candidates in beautiful Edinburgh. Get in touch if you're interested in a PhD on understanding the mechanisms of soil carbon cycling and the role of microbes. We work in different ecosystems: peatlands, forests and agricultural soils. Please repost/spread the word.

New blog post!

metaMDBG (@gaetanbenoit.bsky.social) and Myloasm (@jimshaw.bsky.social) have had recent releases, so I updated the benchmarks from the Autocycler paper:
rrwick.github.io/2025/09/23/a...

Both tools improved considerably! Time to update your conda environments 😄

Any academic folks on H1B visas (even with stamps in passports) please get legal advice from your University attorneys before leaving the US.

A genomic view of Earth’s biomes - Nature Reviews Genetics Genome-wide approaches have uncovered the vast microbial and viral diversity across ecosystems. This Review explores advances in metagenomics, single-cell sequencing and functional profiling to elucid...

A genomic view of Earth’s biomes www.nature.com/articles/s41...

How the twin-arginine translocase (Tat) system manages to transport folded proteins across membranes without any leaks? To answer this fundamental question we solved the first structure of TatB3C3 complex with bound cargo. Please check out new preprint!
t.co/962Kj9pt6F

isme-microbes.org/isme-scholar...

Opportunity for Senior Lecturer (Associate Professor) in Biochemistry/Microbiology at RMIT University (Melbourne Australia) ref: JR41993 | closing: 12-Oct-2025 #biochem #chemsky 🧪
rmit.wd3.myworkdayjobs.com/en-US/RMIT_C...

The 28th European Nitrogen Cycle meeting (ENC28) brought together over 70 participants from 13 countries at @cemess.bsky.social @univie.ac.at! Inspiring CoE Microplanet closing lecture by Jan Willem Erisman. Thanks to all the speakers and participants for making it such a stimulating event.

Expansion of aerobic methanotrophy to the phylum of Actinomycetota and its environmental implications | Applied and Environmental Microbiology The climate crisis is one of the most imminent threats to humanity and all life on our planet. Methane is not only the second most potent greenhouse gas (GHG) and is responsible for approximately 31% of GHG-induced global warming since the start of the industrial revolution (1) but is also the most rapid increasing GHG in the atmosphere (2). The latter is likely caused by increased microbiological production of methane from, e.g., wetlands (2). This fact stresses the importance of methanotrophic microbes that can degrade methane with and without oxygen (3, 4) and thereby fulfill a crucial role in our global climate.

Wow, our AEM paper on a new methane-oxidizing bacterium just got a Commentary! 🎉
Congrats Kambara-san—so happy to see the work getting recognized!
journals.asm.org/doi/10.1128/...

Willing to join us @pasteur.fr for a PhD for a project on how interactions between mobile genetic elements shape bacterial adaptation? Subject to be tailored to candidates with keen interest in evolution, genomics, computational biology, microbiology. Check www.pasteur.fr/en/education...

MAGdb: a comprehensive high quality MAGs repository for exploring microbial metagenome-assemble genomes. #MAGs #Metagenomics #MetagenomeAssembly #GenomeBiology
genomebiology.biomedcentral.com/articles/10....

New preprint from our team! Experimental evidence that ammonia-oxidizing archaea in sponges use branched chain amino acids as substrates - possibly also key for host interaction

#Nitrification
#MicroSky 🧪 #ArchaeaSky
@bglasl.bsky.social @kathikitzinger.bsky.social

www.biorxiv.org/content/10.1...

We are hiring: Full Professor of Environmental Biogeochemistry of Metals Human activities are driving rapid environmental change on a global scale, with pollutants playing a critical role in pushing planetary systems beyond safe limits. These changes have profound conseque...

Deadline approaching on Sept 17! We are hiring a Full Professor of Environmental Biogeochemistry of Metals at #CeMESS at the University of Vienna.

Learn more: 🔗 edge.univie.ac.at/news-talks/n...

@edge-vienna.bsky.social @univie.ac.at #EnvironmentalBiochemistry

prize winner Nils Ganzwohl with the ENC28 organizing committee

prize winner Carolin Otersen with the ENC28 organizing committee

Congrats to Nils Ganzwohl and Carolin Otersen for winning the Poster prizes at the 28th European Nitrogen Cycle meeting #ENC28

and led by @bettinaglasl.bsky.social