VolumeEM's Avatar

VolumeEM

@volumeem1.bsky.social

Building an infrastructure for volume EM (vEM) to serve the bioscience research community one slice at at time.

288 Followers  |  198 Following  |  280 Posts  |  Joined: 26.11.2024  |  1.8925

Latest posts by volumeem1.bsky.social on Bluesky

The result? Stunning insights into cell structures such as nuclei, mitochondria are possible, as well helping us better understand many important diseases.

02.02.2026 20:16 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

This short animated video offers a clear, visual introduction to volume electron microscopy (vEM), showing how ultra-thin serial planes of cells are imaged at the nanoscale with electrons and then computationally assembled into detailed 3D views.

02.02.2026 20:16 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Overview of Volume Electron Microscopy
YouTube video by Volume EM Community Overview of Volume Electron Microscopy

๐ŸŽฌ Just dropped: our latest video!

If youโ€™re new to volume EM, a non-scientist, or a scientist from another field, this video is a great place to start.

#vEM #volumeelectronmicroscopy #volumeemcommunity

www.youtube.com/watch?v=jJmW...

02.02.2026 20:14 โ€” ๐Ÿ‘ 3    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
How To Prepare An ITO Coverslip For Array Tomography
YouTube video by Volume EM Community How To Prepare An ITO Coverslip For Array Tomography

๐ŸŽฅ New Video Alert!
We are excited to share a new how-to video on preparing an ITO coverslip for array tomography. A big shoutout to Aaron Sait for creating this clear, step-by-step tutorial.

๐Ÿ“บ Check out the video: youtu.be/DMr1Aveb1Zg?...

#volumeEM #ArrayTomography

08.12.2025 12:11 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Volume EM Visualization of 3D Synaptic Ultrastructure in Postmortem Human Prefrontal Cortex - FocalPlane Volume EM Visualization of 3D Synaptic Ultrastructure in Postmortem Human Prefrontal Cortex - Blog series

Volume EM Visualization of 3D Synaptic Ultrastructure in Postmortem Human Prefrontal Cortex

This @volumeem1.bsky.social case study covers the challenges, solutions and impact of ultrastructural analysis of postmortem brain tissue.

focalplane.biologists.com/2025/10/31/v...

12.11.2025 11:05 โ€” ๐Ÿ‘ 8    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
LinkedIn This link will take you to a page thatโ€™s not on LinkedIn

๐Ÿ—ณ๏ธ Voting is now open for the 2025 Volume EM Image Competition!

โœ… Vote for your top 3 favorites in each category
๐Ÿ•™ Voting closes October 9 at 4:00 PM BST / 10:00 AM CT
๐Ÿ† Winners will be announced at the Town Hall Meeting later that day!
๐Ÿ‘‰ Cast your vote here: www.volumeem.org/vote_awesome...

07.10.2025 20:53 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image Post image Post image

๐ŸŒŸ Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! ๐ŸŒŸ

Submit to one or both categories:
1๏ธโƒฃ The Power of EM
2๏ธโƒฃ Bringing Meaning to the Data

๐Ÿ† $250 for 1st, $100 for 2nd & 3rd (each category)

๐Ÿ”— www.volumeem.org/awesome-imag...

Details and last year's winning images โฌ‡๏ธ

29.09.2025 09:42 โ€” ๐Ÿ‘ 8    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

@royalmicrosoc.bsky.social @bioimagingna.bsky.social @bioimaginguk.bsky.social @globalbioimaging.bsky.social @micro-au.bsky.social @ccp-volumeem.bsky.social

29.09.2025 09:47 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

๐Ÿ—ณ๏ธ Voting opens Oct 7 on our site
๐Ÿ† Winners announced Oct 9 @ virtual Town Hall
๐Ÿ“ง Questions? vemcommunity@gmail.com

#volumeEM #AwesomevEMImages

29.09.2025 09:43 โ€” ๐Ÿ‘ 0    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Post image Post image Post image

๐ŸŒŸ Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! ๐ŸŒŸ

Submit to one or both categories:
1๏ธโƒฃ The Power of EM
2๏ธโƒฃ Bringing Meaning to the Data

๐Ÿ† $250 for 1st, $100 for 2nd & 3rd (each category)

๐Ÿ”— www.volumeem.org/awesome-imag...

Details and last year's winning images โฌ‡๏ธ

29.09.2025 09:42 โ€” ๐Ÿ‘ 8    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
Microsoft Forms

LAST CALL!

Please take the anonymous, 10-minute survey so we can learn more about the computational needs of the volumeEM community: forms.office.com/e/eMAJGCKUnc

The survey will close on Friday 19th September, so make sure your voice is heard!

10.09.2025 21:39 โ€” ๐Ÿ‘ 0    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Awesome image competition - 2025 ๐Ÿ“ธ We are seeking impressive volume EM (vEM) images as part of our mission to promote our Volume EM Community Initiative and vEM techniques to the world! We'd love to offer you the opportunity to...

๐Ÿ“ฃ The Awesome vEM Images Competition is back!

Submit your images in one of two categories:
๐Ÿ–ผ๏ธ The Power of vEM
๐Ÿง  Bringing Meaning to the Data (New!)

๐Ÿ† Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
๐Ÿ“… Deadline: Oct 2, 5PM CT
๐Ÿ”— More details: www.volumeem.org/awesome-imag...

24.08.2025 15:39 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

๐Ÿ“ฃ Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this yearโ€™s Town Hall is strengthening connections across the global community.

๐Ÿ‘‰ Register now on our website: www.volumeem.org/2025-town-ha...

23.08.2025 09:20 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Exchange of Experience 2025 | Global BioImaging Join Us At: Imaging in 2035 - Sustaining Infrastructure Ecosystems and Advanced Technologies October 6-10, 2025 | Hybrid Event | Montreal, Canada Be part of thโ€ฆ

๐—ช๐—ต๐—ฎ๐˜ ๐—œ๐˜€ ๐—š๐—•๐—œ๐˜…๐—•๐—œ๐—ก๐—”๐Ÿฎ๐Ÿฌ๐Ÿฎ๐Ÿฑ?
Two conferences. One global conversation.
We bring together the ๐—š๐—น๐—ผ๐—ฏ๐—ฎ๐—น ๐—•๐—ถ๐—ผ๐—œ๐—บ๐—ฎ๐—ด๐—ถ๐—ป๐—ด ๐—˜๐˜…๐—ฐ๐—ต๐—ฎ๐—ป๐—ด๐—ฒ ๐—ผ๐—ณ ๐—˜๐˜…๐—ฝ๐—ฒ๐—ฟ๐—ถ๐—ฒ๐—ป๐—ฐ๐—ฒ ๐—–๐—ผ๐—ป๐—ณ๐—ฒ๐—ฟ๐—ฒ๐—ป๐—ฐ๐—ฒ and the ๐—•๐—œ๐—ก๐—” ๐—–๐—ผ๐—บ๐—บ๐˜‚๐—ป๐—ถ๐˜๐˜† ๐—–๐—ผ๐—ป๐—ด๐—ฟ๐—ฒ๐˜€๐˜€ for a unique week of knowledge exchange.

30.05.2025 06:37 โ€” ๐Ÿ‘ 3    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
Post image

Big news! volumeEM has been ranked the second most requested technology of 2024 in Biological Imaging in the latest Euro-Bioimaging Annual Report!

๐Ÿ“– Read the full report here: www.eurobioimaging.eu/news/euro-bi...

#volumeEM

22.07.2025 12:39 โ€” ๐Ÿ‘ 15    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Presented by:
by Jason Yin, Jason Liang and Joseph Sall from Alice Liang Lab, NYU Langone Health Microscopy Core, New York, USA

- On behalf of the Training Working Group.

18.07.2025 13:26 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
How To Do Flat Embedding
YouTube video by Volume EM Community How To Do Flat Embedding

๐ŸŽฅ New Video: How to Do Flat Embedding

Weโ€™re excited to share the latest video from the vEM Community! In this video, you'll learn the process of flat embedding samples for SBF-SEM, a crucial method for high-resolution imaging: www.youtube.com/watch?v=VbS2...

#volumeEM #SBFSEM #FlatEmbedding

18.07.2025 13:25 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

The vEM Tech Forum 2026 is organized by Alice Liang (NYU Langone Health), Kun Song (Peking University) and Qiang Guo (Peking University).
We can't wait to connect with all of you there!

14.07.2025 22:38 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

โœจ ๐—ฆ๐—ฎ๐˜ƒ๐—ฒ ๐˜๐—ต๐—ฒ ๐——๐—ฎ๐˜๐—ฒ! โœจ

Weโ€™re excited to announce that the ๐ฏ๐„๐Œ ๐“๐ž๐œ๐ก๐ง๐จ๐ฅ๐จ๐ ๐ฒ ๐…๐จ๐ซ๐ฎ๐ฆ ๐Ÿ๐ŸŽ๐Ÿ๐Ÿ” is now officially on the calendar!

๐Ÿ“… October 12-15, 2026
๐Ÿ“ Peking University, Beijing, China

Stay tuned for more details!

14.07.2025 22:37 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preview
New insights into corneal development from vEM - FocalPlane New insights into corneal development from vEM - Volume EM

Discover how SBF-SEM (Serial Block-Face Scanning Electron Microscopy), a vEM technique, is being used to unveil new perspectives on corneal development.

Check out our new case study: tinyurl.com/54pxp6ku

Authors: Rob Young, Kiranjit Bains, Phil Lewis and Andrew Quantock - Cardiff University, UK

23.06.2025 21:01 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Post image

Next Euro-Bioimaging Virtual Pub/volumeEM Series!

Join Andreas Mรผller @andimicroscopy.bsky.social from Paul Langerhans Institute, TU Dresden, for a talk on "The Exploratory Potential of Volume Electron Microscopy"!

๐Ÿ—“๏ธ June 20th, 2025
โฐ 13:00 CEST
๐Ÿ”— Register: www.eurobioimaging.eu/events/explo...

10.06.2025 12:30 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
AI Segmentation in Volume Electron Microscopy
YouTube video by Volume EM Community AI Segmentation in Volume Electron Microscopy

๐ŸŽฅ New #volumeEM Video Alert: AI Segmentation in Volume Electron Microscopy! www.youtube.com/watch?v=nIoz...

Segmentation is key to analyzing 3D volume EM data. Learn how semantic, instance, and panoptic methods isolate structures like mitochondria, nuclei, and cytoplasm in complex tissues.

16.05.2025 03:50 โ€” ๐Ÿ‘ 17    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Post image Post image

empanada new version (v1.2) released!!

empanada.readthedocs.io/en/latest/ Youโ€™ll see many goodies in this release:
1. Two new models: DropNet and NucleoNet
2. Several new modules includes tiling

Enjoy and please let us know if this works for you, happy segmenting!

05.05.2025 21:39 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Enabling global image data sharing in the life sciences - Nature Methods This Perspective provides a roadmap toward globally federated open data resources for bioimaging data.

๐Ÿ’กCheck out this new proposal recently published where new strategies on Global sharing of image data/metadata, AI under a global federated model are discussed.

A publication by @Antje Keppler et al.
@eurobioimaging.bsky.social

doi.org/10.1038/s415...

02.04.2025 17:03 โ€” ๐Ÿ‘ 7    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

Excited to announce that "Enabling Global Image Data Sharing in the Life Sciences" was published in Nature Methods by an international working group including members of #EuroBioImaging ERIC. ๐ŸŽ‰
Don't miss the checklist towards an image data sharing ecosystem ! ๐Ÿ”ฝ
www.nature.com/articles/s41...

28.03.2025 14:53 โ€” ๐Ÿ‘ 14    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2
Preview
Application Strategies on Volume Electron Microscopy Please join us for the Virtual Pub/volumeEM series on Friday, April 25th at 13:00 CEST. We welcome Feng-Xia (Alice) Liang, from New York University, for a talk entitledโ€ฆ

Join us for the Virtual Pub/volumeEM series on Friday, April 25th at 13:00 CEST.

We welcome Feng-Xia (Alice) Liang, from New York University, for a talk entitled, "Application Strategies on Volume Electron Microscopy"

All are welcome to join!

bit.ly/4c9J1Vw

01.04.2025 09:27 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

๐Ÿ”Ž๐ŸŒ๐Ÿงญ๐Ÿ”ฌ #volumeEM facility found in
Electron Microscopy Unit
NUS Yong Loo Lin School of Medicine

With #SBF-SEM #sAT #ssTEM

Website
bit.ly/3FbHnq7

#globalvEMmap โฌ‡
bit.ly/3xKN5bD

Add your #volumeEM facility โฌ‡
bit.ly/3EogwUw

07.03.2025 16:06 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

It's TODAY! Join the #VirtualPub/#VolumeEM Series with Aaran Vijayakumaran, University of Cambridge, for a talk entitled, "3D Nanoscale Architecture and Physiology of the Human Airway Epithelium."
All are welcome to join!
๐Ÿ• Starting at 13:00 CET
Register ๐Ÿ”ฝ
buff.ly/3EP9R8S

28.02.2025 06:58 โ€” ๐Ÿ‘ 6    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
How to: "Enhance ribbon sticking while performing sample sectioning using an eyelash"
YouTube video by Volume EM Community How to: "Enhance ribbon sticking while performing sample sectioning using an eyelash"

๐Ÿ“ฝ๏ธ๐Ÿ‘€
Do you know that an eyelash can be of great help for vEM techniques?

Check this "How-to" video featuring Dr Ian White with the title: "How to Enhance ribbon sticking while performing sample sectioning using an eyelash"

๐Ÿ‘‰ youtu.be/tBh0bjkHxR8

๐Ÿ’กSubmit your video idea to vemcommunity@gmail.com

27.02.2025 09:03 โ€” ๐Ÿ‘ 7    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

๐Ÿ”Ž๐ŸŒ#volumeEM facility spotted in
Max-Planck-Institute for Multidisciplinary Sciences!

with FIB-SEM, Automated tape sectioning and (sAT)

Website โฌ‡
www.mpinat.mpg.de/em-moebiusย 

____________________________________
Global vEM map โฌ‡
bit.ly/3xKN5bD
ย 
Add your #volumeEM facility โฌ‡
bit.ly/3EogwUw

27.02.2025 08:36 โ€” ๐Ÿ‘ 5    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@volumeem1 is following 20 prominent accounts