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Chris Fields

@cjfields.bsky.social

Microbiologist turned computational biologist Bioinformatics Core Director, HPCBio Open Bioinformatics Foundation Board Member #metagenomics #microbiome #pangenomics #python #r (yeah yeah, and #bioperl)

1,911 Followers  |  468 Following  |  20 Posts  |  Joined: 12.09.2023  |  2.0541

Latest posts by cjfields.bsky.social on Bluesky

I can't recall it working since I've been here in 2002.

28.08.2025 19:44 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Microbial analysis profiling workshop - Sept 2025 - Carver Biotech Microbial Profiling Analysis Workshop WHEN: Held over 3 Fridays from 10am โ€“ 2:45pm;ย Sept. 12, Sept. 19th, & Sept. 26th. ย ย Note:ย We will record the sessions if you have to miss part of a day and make i...

Hi all! We're hosting another Microbial Profiling Analysis Workshop, this time online! The workshop starts Sept 12. To learn more: biotech.illinois.edu/microbial-an...

28.08.2025 19:37 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Nobel laureate: I owe America my success. Today, its scientific future is in danger | CNN Dr. Ardem Patapoutian says he watches โ€œwith deep sadness as the United Statesโ€™ remarkable scientific enterprise, which took generations of hard work and national investment to build, faces a concerted...

Published an op-ed for @cnn.com: โ€œNobel laureate: I owe America my success. Today, its scientific future is in danger.โ€
A personal reflection on whatโ€™s at stake as science funding gets slashed. Iโ€™d be grateful if you could amplify both in and beyond the science world.
www.cnn.com/2025/04/09/h...

09.04.2025 11:30 โ€” ๐Ÿ‘ 899    ๐Ÿ” 493    ๐Ÿ’ฌ 15    ๐Ÿ“Œ 25
Columbia University caves to demands to restore $400m from Trump administration

Measures include empowering security officers to arrest people, and reassigning control of Middle East department

Columbia University caves to demands to restore $400m from Trump administration Measures include empowering security officers to arrest people, and reassigning control of Middle East department


Exclusive: NIH freezes all research grants to Columbia University
Amid negotiations with Trump, the university could risk losing nearly $700 million

Exclusive: NIH freezes all research grants to Columbia University Amid negotiations with Trump, the university could risk losing nearly $700 million

How it started / How it's going

09.04.2025 20:06 โ€” ๐Ÿ‘ 435    ๐Ÿ” 122    ๐Ÿ’ฌ 20    ๐Ÿ“Œ 17
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Today marks the beginning of OpenRxiv, which replaces bioRxiv and medRxiv, the world's largest preprint platform for life and medical science
openrxiv.org/introducing-...
@openrxiv.bsky.social

11.03.2025 14:55 โ€” ๐Ÿ‘ 299    ๐Ÿ” 90    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 5
Graph between 1/20 and 2/28 of fiscal year 2024 and 2025 new awards in the EDU directorate.

Graph between 1/20 and 2/28 of fiscal year 2024 and 2025 new awards in the EDU directorate.

๐Ÿงช๐Ÿšจ NSF's Directorate for STEM Education (EDU) has halted making nearly all new awards since inauguration day.

Among *many* other things, EDU runs the Graduate Research Fellowship Program (GRFP).

We need to protect the education & training of the next gen of scientists #StandUpForScience

Thread๐Ÿ‘‡๐Ÿงต

03.03.2025 13:55 โ€” ๐Ÿ‘ 234    ๐Ÿ” 162    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 24
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Cartoon by @paulnoth.bsky.social

12.03.2025 16:23 โ€” ๐Ÿ‘ 907    ๐Ÿ” 212    ๐Ÿ’ฌ 9    ๐Ÿ“Œ 10
Long letter from NSF Director Sethuraman Panchanathan, available here: https://nsf-gov-resources.nsf.gov/files/Letter-to-the-Community.pdf

Long letter from NSF Director Sethuraman Panchanathan, available here: https://nsf-gov-resources.nsf.gov/files/Letter-to-the-Community.pdf

๐Ÿงช The NSF director is lying to you.

Letโ€™s fact check 7 claims from yesterdayโ€™s letter to the community, while pointing out 3 critical omissions. ๐Ÿงต

12.03.2025 12:51 โ€” ๐Ÿ‘ 491    ๐Ÿ” 316    ๐Ÿ’ฌ 11    ๐Ÿ“Œ 42
Upcoming Workshops | HPCBio

We're hosting a Microbial Profiling Analysis Workshop! Deadline for signup: March 21! There are pre-requisites so please sign up early to allow yourself time to acquire any missing knowledge. To learn more visitโ€ฏgo.illinois.edu/hpcbio-works...

10.03.2025 15:14 โ€” ๐Ÿ‘ 1    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

March 7 @standupforscience.bsky.social happened. I now have a question. Reply to this thread w ur answers!

What do we do with this momentum? Think innovative, creative, mundane, give us all your ideas.

We have ideas, but this is for EVERYONE. I want everyoneโ€™s ideas.

08.03.2025 00:13 โ€” ๐Ÿ‘ 92    ๐Ÿ” 26    ๐Ÿ’ฌ 30    ๐Ÿ“Œ 2
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More than 5,000 USDA workers fired by Trump ordered back to work for now The U.S. Department of Agriculture must temporarily reinstate more than 5,000 probationary employees fired since Feb. 13, according to a ruling by the Merit Systems Protection Board.

The U.S. Department of Agriculture must temporarily reinstate more than 5,000 probationary employees fired since Feb. 13, according to a ruling by the Merit Systems Protection Board.

05.03.2025 18:15 โ€” ๐Ÿ‘ 2826    ๐Ÿ” 619    ๐Ÿ’ฌ 81    ๐Ÿ“Œ 51
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A reporting page from @seandavis for affected US Government Biomedical Data resources. Sunday not a good day. stats.uptimerobot.com/Zrqh8AhvKn

02.03.2025 16:19 โ€” ๐Ÿ‘ 54    ๐Ÿ” 13    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
First of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

First of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Second of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Second of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Third of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Third of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Fourth of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

Fourth of four screen grabs showing โ€œSafari canโ€™t open the page because the server canโ€™t be foundโ€ error messages on NIH, NCBI, GenBank and BLAST websites.

The NIH website, including NCBI, GenBank, and BLAST are down. I thought it might be a brief outage so waited 12 hours and checked again before posting this. Theyโ€™re still down.

It is hard to express just how fundamental these tools are to biology and medicine: research, applied, public and private.

02.03.2025 15:06 โ€” ๐Ÿ‘ 193    ๐Ÿ” 68    ๐Ÿ’ฌ 22    ๐Ÿ“Œ 10
The American Society for Microbiology is steadfast in its commitment to advancing inclusion, diversity, equity, access and accountability. This commitment becomes even more important in light of the ongoing challenges facing the scientific community.
 
We recognize that recent ASM actions have led some of our members to question our dedication to our values. We hear your concerns and take responsibility for our decisions and mistakes. We are taking actions to more clearly affirm our commitment to ensuring everyone feels respected and valued. We know that it will take time and action to earn and maintain your trust.
 
ASM has a long and proud history as a leader advocating for diversity and equity in the microbial sciences, supporting vital, federally funded programs like ABRCMS, MOSAIC and many other initiatives that foster a more inclusive and welcoming scientific community for all. We reaffirm our existing commitment to the values that these programs represent.
 
Specifically, we will:
Ensure that our decision-making processes reflect our values.
Continue to review and update a comprehensive diversity, equity and inclusion strategy, with clear action plans and programming.
Strengthen partnerships with affiliated societies to advance diversity, inclusion and innovation in science.
Leverage our resources and influence to advocate for evidence-based scientific public policy and workforce development.
In the face of ongoing threats to science and equity, ASM is dedicated to not only supporting, but also empowering our membersโ€”particularly those who have fought for visibility and belonging in our field. We are committed to promoting a future in microbial sciences that honors the contributions of all individuals, and to advocating for evidence-based public policy that serves the needs of the public and the scientific community alike. We have been, and always will be, champions for our members and our community, and our commitment is stronger than ever.
(truncated)

The American Society for Microbiology is steadfast in its commitment to advancing inclusion, diversity, equity, access and accountability. This commitment becomes even more important in light of the ongoing challenges facing the scientific community. We recognize that recent ASM actions have led some of our members to question our dedication to our values. We hear your concerns and take responsibility for our decisions and mistakes. We are taking actions to more clearly affirm our commitment to ensuring everyone feels respected and valued. We know that it will take time and action to earn and maintain your trust. ASM has a long and proud history as a leader advocating for diversity and equity in the microbial sciences, supporting vital, federally funded programs like ABRCMS, MOSAIC and many other initiatives that foster a more inclusive and welcoming scientific community for all. We reaffirm our existing commitment to the values that these programs represent. Specifically, we will: Ensure that our decision-making processes reflect our values. Continue to review and update a comprehensive diversity, equity and inclusion strategy, with clear action plans and programming. Strengthen partnerships with affiliated societies to advance diversity, inclusion and innovation in science. Leverage our resources and influence to advocate for evidence-based scientific public policy and workforce development. In the face of ongoing threats to science and equity, ASM is dedicated to not only supporting, but also empowering our membersโ€”particularly those who have fought for visibility and belonging in our field. We are committed to promoting a future in microbial sciences that honors the contributions of all individuals, and to advocating for evidence-based public policy that serves the needs of the public and the scientific community alike. We have been, and always will be, champions for our members and our community, and our commitment is stronger than ever. (truncated)

The full email sent to @asm.org members reaffirming the Society's commitment to inclusion, diversity, equity, access, and accountability.

ASM has a long and proud history as a leader advocating for diversity and equity in the microbial sciences.

This builds upon this: asm.org/Newsroom/Fea...

18.02.2025 21:22 โ€” ๐Ÿ‘ 71    ๐Ÿ” 14    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 1
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Zachary Lewis on LinkedIn: Laboratory Research Technician We have open positions for a lab manger and a laboratory technician. Applications from displaced federal employees are welcome. Lab manager position:โ€ฆ

Two open positions for a lab manger and a laboratory technician. Applications from displaced federal employees are welcome.

Lab manager position: www.ugajobsearch.com/postings/410...
Lab tech position: www.ugajobsearch.com/postings/391...

Please email zlewis@uga.edu if you have questions

24.02.2025 01:44 โ€” ๐Ÿ‘ 54    ๐Ÿ” 60    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2

The Democrats on the House Science Committee have set up a website to collect stories from fired federal employees, anonymously if desired. Please amplify. (This helps the lawyers establish standing for bringing legal cases against the administration!)

democrats-science.house.gov/sciencefirings

19.02.2025 06:24 โ€” ๐Ÿ‘ 2272    ๐Ÿ” 1959    ๐Ÿ’ฌ 13    ๐Ÿ“Œ 47
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PLOS statement on recent US Executive Orders and scientific integrity - The Official PLOS Blog Since its founding over twenty five years ago PLOS has been dedicated to advancing open science, ensuring that knowledge is accessible toโ€ฆ

Bravo @plos.org!

US exec orders "stand in direct conflict with our core values, our mission, edit policies"

"PLOS will not compromise on issues of scientific rigor & editorial integrity... we seek diversity because more expert voices make for better science"

theplosblog.plos.org/2025/02/plos...

21.02.2025 14:45 โ€” ๐Ÿ‘ 357    ๐Ÿ” 120    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 12

Yep, getting โ€˜500 internal server errorโ€™ as well, and logging in via eRA or Orcid also has issues (likely server side)

21.02.2025 16:50 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

The NCBI website is down

20.02.2025 17:08 โ€” ๐Ÿ‘ 2    ๐Ÿ” 3    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 0
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SORTEE awards Awards of Society for Open, Reliable, and Transparent Ecology and Evolutionary biology (SORTEE)

Do you have a project in ecology and evolution that exemplifies open science? If so nominate the project for a SORTEE Commendation Award:

More details about the SORTEE Commendation Award:

21.02.2025 11:28 โ€” ๐Ÿ‘ 24    ๐Ÿ” 23    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Ax falls on elite group of Ph.D.s training to lead U.S. public health labs Most of the fellows in CDCโ€™s highly competitive Laboratory Leadership Service were fired last weekend

Ax falls on elite group of Ph.D.s training to lead U.S. public health labs | Science | AAAS www.science.org/content/arti...

21.02.2025 12:22 โ€” ๐Ÿ‘ 5    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Appleโ€™s new sci-fi series โ€œMurderbotโ€ to make global debut May 16, 2025 Today, Apple TV+ unveiled a first look at โ€œMurderbot,โ€ created by Chris and Paul Weitz and starring Alexander Skarsgรฅrd

I have been so excited since I found out this would be announced today! RIP any ability for me to concentrate: www.apple.com/tv-pr/news/2...

20.02.2025 17:09 โ€” ๐Ÿ‘ 7811    ๐Ÿ” 1567    ๐Ÿ’ฌ 464    ๐Ÿ“Œ 746
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Will the world of short-read Next-Generation Sequencing change forever? We are about to find out! #Roche #SBX #ShortReads #NovaSeqKiller

20.02.2025 17:01 โ€” ๐Ÿ‘ 46    ๐Ÿ” 14    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 2

Registration is now open for TWO (2) @nf-co.re hackathons ๐ŸŽ‰ (First time that this has ever happened!)

๐ŸŒ March: online and distributed local sites
๐Ÿ‡บ๐Ÿ‡ธ May: in-person at Boston #NextflowSummit

See the nf-core events page for the full list of hackathons: nf-co.re/events/hacka...

13.02.2025 19:52 โ€” ๐Ÿ‘ 1    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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March 7. Stand Up For Science. Rallies in DC and nationwide. ๐Ÿงช

Please visit the website and spread the word.

www.standupforscience2025.org

11.02.2025 13:12 โ€” ๐Ÿ‘ 171    ๐Ÿ” 106    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 4

An answer to the question circulating this week about whether to use US flags at protests

10.02.2025 01:52 โ€” ๐Ÿ‘ 4663    ๐Ÿ” 761    ๐Ÿ’ฌ 34    ๐Ÿ“Œ 15
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Funding cuts by state

Total NIH funding cuts by state. This can be helpful when talking to your representatives

www.datawrapper.de/_/Y0Pnk/

09.02.2025 21:35 โ€” ๐Ÿ‘ 124    ๐Ÿ” 85    ๐Ÿ’ฌ 6    ๐Ÿ“Œ 4

For folks who have left, but not deleted accounts other social media platforms, now would be a good time to engage in scicomm on what NIH does and what Facilities and Administrative costs are where there is a vacuum โ€”to whatever level of safety and comfort you need.

09.02.2025 22:09 โ€” ๐Ÿ‘ 10    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Federal Courts Are the Frontline for Those Opposing Trump Executive Orders With a compliant Congress and mostly quiet streets, the presidentโ€™s opponents are turning to the judicial branch with a flurry of legal actions. But can the courts keep up?

โ€œOn Friday, Democratic attorneys general went back to court to demand that a federal judge enforce his restraining order that was meant to keep billions of dollars in federal grant funds flowing. They said that the Trump administration had not compliedโ€

www.nytimes.com/2025/02/09/u...

09.02.2025 18:06 โ€” ๐Ÿ‘ 2719    ๐Ÿ” 640    ๐Ÿ’ฌ 74    ๐Ÿ“Œ 21

@cjfields is following 19 prominent accounts