BioData's Avatar

BioData

@bio-data.bsky.social

Tony Rinaud, data scientist, PhD in natural sciences. Offering custom scientific and environmental reports, data analysis, workflow optimization and programming courses in biology and ecology. https://bio-data.fr

67 Followers  |  217 Following  |  14 Posts  |  Joined: 28.05.2025  |  1.63

Latest posts by bio-data.bsky.social on Bluesky

BioData | Tony Rinaud, PhD | Data scientist BioData offers personalized data analyses and visualizations from biological and ecological datasets. We also provide custom scripts to simplify tedious manual tasks as well as programming course in R...

Head to our website to get a quote for your data analyses needs!

Biostatistics, bioinformatics, cartography or bioacoustics, get the most of our 10+ years expertise.

bio-data.fr

30.05.2025 17:48 β€” πŸ‘ 1    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Time to publish ethically: DAFNEE, a database of academia-friendly journals in ecology and evolutionary biology.

New preprint: we advertise DAFNEE, a database of academia-friendly eco-evo-archaeo journals. 1/6
#AcademicPublishing #ecoevo #archaeology #EthicalPublishing #SocietyJournals #DiamondOpenAccess
doi.org/10.32942/X24...

24.06.2025 18:42 β€” πŸ‘ 72    πŸ” 66    πŸ’¬ 1    πŸ“Œ 5
Post image

A fresh version of the Rare birds in Western Palearctic is live on tony-rinaud.shinyapps.io/WP_rare_birds/!

New sightings are coming from Syria, Poland and Luxemburg.
Many thanks for the respective members for their help!

#Rstats #Shiny #RareBirds #WPBirding #MEGA

@bio-data.bsky.social

20.06.2025 21:10 β€” πŸ‘ 7    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
Preview
Introducing {avilistr}: The AviList Global Bird Taxonomy is Now Available in R | Daly Analytics The Cornell Lab of Ornithology announced the release of AviList β€” the first unified global bird taxonomy. Today, I'm excited to share that this groundbreaking dataset is now available to R users thro...

πŸ¦† My new R package {avilistr} is live on CRAN! πŸŽ‰

The first unified global bird taxonomy (11,131 species) is now accessible to #rstats users. I built it this weekend after Cornell Lab's AviList release last week!

πŸͺΏ Blog: www.dalyanalytics.com/blog/avilist...
πŸ’» GitHub: github.com/dalyanalytic...

17.06.2025 15:40 β€” πŸ‘ 142    πŸ” 44    πŸ’¬ 5    πŸ“Œ 5
Preview
Tidy Population Genetics We provide a tidy grammar of population genetics, facilitating the manipulation and analysis of data on biallelic single nucleotide polymorphisms (SNPs). `tidypopgen` scales to very large genetic data...

We are excited to announce that tidypopgen – a new package for rapid population genetic workflows in R – is now available atΒ evolecolgroup.github.io/tidypopgen/Β πŸ§¬πŸ’»Β Read more in the preprint describing its features here:Β www.biorxiv.org/content/10.1... #popgen #Rpackage #genetics 1/2

20.06.2025 12:19 β€” πŸ‘ 46    πŸ” 21    πŸ’¬ 2    πŸ“Œ 2

Link to this website: tony-rinaud.shinyapps.io/WP_rare_birds/

20.06.2025 12:59 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

#Rstats #Rare_birds #Birding #Shiny #BioData

20.06.2025 12:59 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

Reach out to Biodata if you need custom visualizations for your biological datasets!

This example is taken from my interactive website about rare bird sightings in the Western palearctic. It represents the yearly distribution of Black scoter sightings in this region, colored for subregions. #Rstats

20.06.2025 12:58 β€” πŸ‘ 4    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
BioData | Tony Rinaud, PhD | Data scientist BioData offers personalized data analyses and visualizations from biological and ecological datasets. We also provide custom scripts to simplify tedious manual tasks as well as programming course in R...

Reach BioData for custom multivariate analyses for your research or environemental projects!

bio-data.fr

16.06.2025 04:28 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

a) and b) panels are for the grey partridge, the dominated species and c) and d) for the red-legged partridge, the dominant in this relationship.

16.06.2025 04:22 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

I wanted to show you an output from a behavioural discriminant analysis that I developed while studying interspecific competition between two sympatric farmland partridges.

The bigger, more agressive species was shifting the behavioural display of the dominated one!
#Ecology #Birds #AnimalBehaviour

16.06.2025 04:19 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
Post image

Check our services on this page: www.bio-data.fr/book-online

From personalized data analyses and visualizations to custom script to optimize your workflow, we are happy to deliver state-of-the-art outputs from our 10+ years experience!

06.06.2025 10:32 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Get in touch if you need genomic or transcriptomic analyses for your research or conservation projects!

bio-data.fr/contact

13.06.2025 09:49 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Another project under prep is a host transcriptomic reaction to blood parasite infections in young wild raptors!
This is the gene expression difference between hosts in subsequent infection stages, seen using volcano and Mean-Adjusted plots.

#Rstats #Bioinformatics #RNAseq #Bloodparasites #Raptors

13.06.2025 09:47 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 2    πŸ“Œ 0
BioData | Tony Rinaud, PhD | Data scientist BioData offers personalized data analyses and visualizations from biological and ecological datasets. We also provide custom scripts to simplify tedious manual tasks as well as programming course in R...

Engage with BioData if you need custom data analyses and visualizations for your research and environnemental projects!

bio-data.fr

12.06.2025 07:33 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Another example of data visualization I am working on at the moment: nesting success of a North American passerine according to nest opening orientation!

#Rstats #Dataviz #Birding #Science #Ecology

12.06.2025 07:32 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
Post image

Check our services on this page: www.bio-data.fr/book-online

From personalized data analyses and visualizations to custom script to optimize your workflow, we are happy to deliver state-of-the-art outputs from our 10+ years experience!

06.06.2025 10:32 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
This figure represents a theorical infection course from Leucocytozoon parasites in the host blood. The different stages of infection are depicted on the y-axis in colour bands and blood parasitemia (or infection intensity) is on the x-axis.

This figure represents a theorical infection course from Leucocytozoon parasites in the host blood. The different stages of infection are depicted on the y-axis in colour bands and blood parasitemia (or infection intensity) is on the x-axis.

This figures showcase the relationship between host body condition and the blood parasitemia (or infection intensity), in A) for all infection stages, in B) for each infection stage (Incresing, peak and decreasing parasitemia).

This figures showcase the relationship between host body condition and the blood parasitemia (or infection intensity), in A) for all infection stages, in B) for each infection stage (Incresing, peak and decreasing parasitemia).

This last figure shows the relationship between four physiological parameters and the host parasitemia (or infection intensity). P-values are displayed at the top of each of the four boxplots.

This last figure shows the relationship between four physiological parameters and the host parasitemia (or infection intensity). P-values are displayed at the top of each of the four boxplots.

These are some figures extracted from my latest scientific publication in Frontiers in Ecology and Evolution

www.frontiersin.org/journals/eco...

Contact us for high-end personalized visualization from ecological datasets!

#Rviz #Stats #Sciences #Ecology #Research

02.06.2025 17:45 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Post image

My most recent project, a shiny interactive website:
tony-rinaud.shinyapps.io/WP_rare_birds/

I designed a custom R code to showcase key statistics from a dataset about rare bird sightings in the Western Palearctic.

Reach out @bio-data.bsky.social if you need a personalized interactive website!

03.06.2025 10:13 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
Post image

My most recent project, a shiny interactive website:
tony-rinaud.shinyapps.io/WP_rare_birds/

I designed a custom R code to showcase key statistics from a dataset about rare bird sightings in the Western Palearctic.

Reach out @bio-data.bsky.social if you need a personalized interactive website!

03.06.2025 10:13 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
This figure represents a theorical infection course from Leucocytozoon parasites in the host blood. The different stages of infection are depicted on the y-axis in colour bands and blood parasitemia (or infection intensity) is on the x-axis.

This figure represents a theorical infection course from Leucocytozoon parasites in the host blood. The different stages of infection are depicted on the y-axis in colour bands and blood parasitemia (or infection intensity) is on the x-axis.

This figures showcase the relationship between host body condition and the blood parasitemia (or infection intensity), in A) for all infection stages, in B) for each infection stage (Incresing, peak and decreasing parasitemia).

This figures showcase the relationship between host body condition and the blood parasitemia (or infection intensity), in A) for all infection stages, in B) for each infection stage (Incresing, peak and decreasing parasitemia).

This last figure shows the relationship between four physiological parameters and the host parasitemia (or infection intensity). P-values are displayed at the top of each of the four boxplots.

This last figure shows the relationship between four physiological parameters and the host parasitemia (or infection intensity). P-values are displayed at the top of each of the four boxplots.

These are some figures extracted from my latest scientific publication in Frontiers in Ecology and Evolution

www.frontiersin.org/journals/eco...

Contact us for high-end personalized visualization from ecological datasets!

#Rviz #Stats #Sciences #Ecology #Research

02.06.2025 17:45 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
BioData | Tony Rinaud, PhD | Data scientist BioData offers personalized data analyses and visualizations from biological and ecological datasets. We also provide custom scripts to simplify tedious manual tasks as well as programming course in R...

Head to our website to get a quote for your data analyses needs!

Biostatistics, bioinformatics, cartography or bioacoustics, get the most of our 10+ years expertise.

bio-data.fr

30.05.2025 17:48 β€” πŸ‘ 1    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

@bio-data is following 20 prominent accounts