Expression Atlas

@opentargets.org just integrated a new differential expression dataset from @expressionatlas.bsky.social includes ~10,000 new evidence for 400 targets and 7 new diseases, adding ~6,000 unique target–disease associations. A huge boost for exploring disease biology & target discovery!

22.09.2025 14:36 — 👍 3    🔁 1    💬 0    📌 0

Exciting news! The latest @expressionatlas.bsky.social bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾 🌽 contributed by our Gramene Database collaborators. Don't miss out! 🧬

20.07.2025 13:35 — 👍 3    🔁 1    💬 0    📌 0

The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.

www.embl.org/training/ari...

11.07.2025 13:03 — 👍 3    🔁 2    💬 0    📌 0

We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.

This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources

Deadline 20 July

08.07.2025 08:21 — 👍 5    🔁 2    💬 0    📌 0

Our bioinformaticians will be attending #ISMBECCB2025!
Catch our talks and posters on @expressionatlas.bsky.social,
@bioconductor.bsky.social, and Persist-seq

#ISMBECCB #ISMB #ECCB #singlecell

25.06.2025 09:15 — 👍 2    🔁 1    💬 0    📌 0

Promotional slide for a webinar titled "What happens when you choose closed? What Creative Commons licenses mean for research and AI." The slide features photos and names of five speakers: Melissa Harrison (Europe PMC / EMBL-EBI), Katherine Hughes (EMBL), Taylor Campbell (Creative Commons), Monica Granados (Creative Commons), and Kat Walsh (Creative Commons). Logos for Europe PMC, Creative Commons, and EMBL are shown at the bottom. The background is green with white text.

Can AI train on my openly licensed research? Do I retain copyright if I choose a CC BY license? Why can’t I reuse a figure from my own paper?

Get the answers in a webinar with Creative Commons, #EuropePMC & EMBL

🗓️ 9 Jul
⏰ 15:00 UTC
🔗 embl-org.zoom.us/webinar/regi...

#OpenScience #AcademicSky 🧪

23.06.2025 09:02 — 👍 12    🔁 9    💬 0    📌 1

🔧 Dear users: Due to EBI-wide maintenance, Annotare will be unavailable today (Thurs 19 June) from 12pm to 1pm BST.
During this time, submission creation or editing will not be possible.
We apologise for the inconvenience and appreciate your understanding.

19.06.2025 10:13 — 👍 0    🔁 0    💬 0    📌 0

This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at
@astrazeneca.bsky.social Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking
@ebi.embl.org

04.03.2025 09:20 — 👍 3    🔁 1    💬 0    📌 0

Thank you to everyone who attended the ELIXIR Spatial Transcriptomics FAIR Data Management Workshop over the last two days, both @ebi.embl.org and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful.

28.02.2025 10:00 — 👍 3    🔁 2    💬 0    📌 0

Our bioinformatics arm of the Functional Genomics Team and
Expression Atlas will participate in the @nf-co.re #hackathon at the Wellcome Genome Campus.

Check out our challenge and join us, everyone is welcome!

@ebi.embl.org @sangerinstitute.bsky.social @nextflow.io
#nextflow #singlecell

12.02.2025 20:42 — 👍 5    🔁 1    💬 0    📌 0

Registration for SCO Spatial Data Meeting (26th Feb, 2025) The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...

Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025

04.02.2025 14:51 — 👍 5    🔁 4    💬 0    📌 0