Christina Ernst

We’re seeing higher-than-usual traffic at the moment, so submissions may take a little longer to process.

Thanks for your patience - the team’s working hard to keep everything running smoothly.

Some users have seen occasional redirect errors when accessing Annotare. Our engineers are on it 🔧 clearing your browser cache usually resolves it in the meantime.

Submitting large files? We strongly recommend using Globus for a faster and more reliable transfer experience, especially for users outside Europe.

🌐 www.ebi.ac.uk/fg/annotare/...

European Bioinformatics Institute - EMBL-EBI We manage the world’s public biological data and make it freely available to the scientific community, provide professional training in bioinformatics, and perform computational biology research. Here...

We’ve recently added new YouTube tutorials showing how to navigate Annotare and use some lesser-known features that make submissions faster and easier.

🎥 www.youtube.com/@EMBL-EBI/se...

If you’re new to Annotare, take a moment to look at our submission guidelines before you start. It’ll save you time and ensure your files and metadata pass validation smoothly.

🔗 www.ebi.ac.uk/fg/annotare/...

Reaching out to the functional genomics community 🧬

If you’re looking to submit your data, you can use our Annotare submission tool at @ebi.embl.org. It connects directly to the ArrayExpress collection for long-term archival and public sharing.

🔗 www.ebi.ac.uk/fg/annotare/...

Gene Markers showing in GTEx experiment.

🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa

@ebi.embl.org

Some scientists aren’t waiting for journals to catch up. They’re showing us what’s next.

The Beyond the Journal awards honor those breaking the mold in how science is shared.

More details: pracheeac.substack.com/p/off-roadin...

Nominate or self-nominate here: www.experiment.foundation/beyond

🚨 Two weeks left to apply for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.

Apply by: 30 September 2025.

Ready to take the next step in your science career?
www.ebi.ac.uk/research/pos...

@sangerinstitute.bsky.social
#postdoc #sciencecareers

Interested in spatial transcriptomics, interactive visualisation, and AI?

We’re teaming up with @mhaniffa.bsky.social and @juliosaezrod.bsky.social on Project 5 - for someone keen to build open tools that make complex biological data more accessible!

Apply by 30 Sep: www.ebi.ac.uk/research/pos...

Got a PhD in nearly any science? Want to do a postdoc? Are you interested in biology, genomics and computers? Perhaps you are computational/maths-ey and want to get closer to the lab? or experimental and want to get a bit more geeky? Want to work with global leaders in genomics and comp. bio? =>

Great career opportunities in Cellular Genomics @sangerinstitute.bsky.social

Big data (human in vivo + in vitro) + AI to derive biological mechanisms at scale.

We are seeking a range of research expertise including spatial omics and perturbation at scale

bioRxiv bat signal going up. We have a big backlog of submissions. If any affiliates have time to do some screening, we (and all the authors) would be immensely grateful! 🙏

My team @ebi.embl.org is open to hosting #ARISE2 fellows!

We‘re especially interested in projects that improve access to single-cell & spatial transcriptomics data (e.g. browsers, standards), or enhance AI-readiness.

Happy to chat if you are applying!

www.embl.org/training/ari...

The Functional Genomics Team at @ebi.embl.org is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.

www.embl.org/training/ari...

We are seeking a Scientific Database Curator at @ebi.embl.org in collaboration with the @saezlab.bsky.social and GSK.

This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources

Deadline 20 July

New Wellcome funding model supports the development of EMBL-EBI open data resources EMBL’s European Bioinformatics Institute (EMBL-EBI) manages the world’s most comprehensive suite of open data resources for the life sciences. Millions of scientists worldwide rely on these data resou...

We're extremely grateful to Wellcome @wellcometrust.bsky.social for engaging in a more long-term funding collaboration with EMBL-EBI.

This will enable us to continue developing our open data resources for global users & leverage innovation in new areas such as AI 🌍

www.ebi.ac.uk/about/news/a...

Paper alert! I am really pleased to share the final version of the work led by Irène Amblard in the team on a regulatory switch controlling Cdx2 expression during posterior body development! #regulatorylogic #devbio @mrc-lms.bsky.social @imperialmed.bsky.social

Used EMBL-EBI data resources to find, analyse, or archive your data? 🧬

Now’s your turn: tell us how you’ve used them + why they matter.

It takes 15 mins and helps keep these services open and free for all.

👉 tinyurl.com/bdf73zpp
Closes 16 July

#opendata #FAIRdata

With #PubMed being down, it’s worth reminding ourselves that European alternatives exist:

🔗 europepmc.org
🔗 www.ebi.ac.uk/ena/browser/...
🔗 www.ensembl.org

This is a fantastic opportunity! 🧬

Come join us at EMBL-EBI!

Registration for SCO Spatial Data Meeting (26th Feb, 2025) The SCO Spatial Data FAIR Meeting will take place on the 26th of February, 2025 at EMBL-EBI, UK. The event will take place from 12.00pm, 26th February to 1.30pm, 27th February, and will discuss metada...

Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025

🎉 Excited to announce job openings in our new lab @mpi-bio-fml.bsky.social in Tübingen!🇩🇪Looking for enthusiastic colleagues to explore regeneration together! We have positions for:
🔬 Research Technician
💻 Bioinformatician
🎓 PhD Studentship
🧪🔬📖 Postdocs
Details and links below👇

Congratulations, Omaya!
Sounds very exciting! 🥳

Excited to share that I’ve joined EMBL-EBI as the new Functional Genomics Team Leader!
Looking forward to this new chapter and all the exciting opportunities and collaborations ahead!

#Bioinformatics #FunctionalGenomics #AI #openscience