Second, check out Andy Beshear. You may hear a lot more from him in the coming years.
For comparison...
@jasonhilton.bsky.social
data wrangler, metadata enthusiast
Second, check out Andy Beshear. You may hear a lot more from him in the coming years.
For comparison...
First, a quick guide to visiting Lexington, KY:
1. Wear blue, not red
2. Visit my sister-in-law's coffee shop The Greenery (Erin's the one feeding the Governor Alanis lyrics)
Congrats @tiagolubiana.bsky.social !
31.07.2025 17:52 β π 1 π 0 π¬ 0 π 0@cmungall.bsky.social had me at "structured data nerd". Great perspectives from Chris & @anshulkundaje.bsky.social
03.07.2025 15:29 β π 3 π 0 π¬ 0 π 0Right? Can't we enjoy the game in absence of a black box model developed by a TV station that has nothing to gain by practicing statistical rigor but benefits from sensationalism & drama?
06.06.2025 18:21 β π 2 π 0 π¬ 0 π 0Highly recommend Nexus by Yuval Noah Harari. Refreshing take on the potential of AI by relating it to innovations, movements & information systems throughout history.
...so read that, watch The Mitchells vs the Machines, and you should be all set for the Age of AI
Another fun CELLxGENE update from this week: We now support ATAC-seq fragments files. You can download the fragments file for all unpaired scATAC-seq datasets and many multiome datasets. More ATAC-seq features (and data) are coming. Happy #DNADay!
25.04.2025 22:58 β π 1 π 2 π¬ 0 π 0Big CELLxGENE news! No longer just human & mouse data.
Now supported: #celegans #zebrafish #drosophila #rat #pig #rabbit and several non-human primates
Please see info on how to contribute data: cellxgene.cziscience.com/docs/032__Co...
"Fortunately, cellxgene classes follow an ontology, a robust structure that defines relationships among the labels." π
Very cool to see how they leveraged the ontological relationships to refine many labels!
So thrilled to see this incredible study published today. Led by some brilliant & amazing people and without these types of studies, any "human <fill in the blank> cell atlas" is destined to just be a "European/white human <fill in the blank> cell atlas".
19.03.2025 23:14 β π 1 π 0 π¬ 0 π 0The #GENETICS issue is now live! You'll find updates from 6 model organism databases & other knowledgebases including AgBioData Consortium, Candida Genome Database, @yeastgenome.bsky.social, SpudDB, Unified Phenotype Ontology, & @zfinmod.bsky.social.
What's on the cover? β¬οΈπ§΅
A new chapter has begun for two of the worldβs most popular preprint platforms, bioRxiv and medRxiv, with the launch of a non-profit organization that will manage them
https://go.nature.com/4iCVnHL
Rare Disease Day
At #ASHG, we recognize the power of #humangenetics & genomics research in advancing rare disease diagnosis, treatment, and advocacy. In celebrating #RareDiseaseDay, let's push the boundaries of discovery and support the millions of people living with rare genetic conditions.
28.02.2025 14:52 β π 4 π 4 π¬ 0 π 0ππ Itβs Rare Disease Day! ππ
Tonight, letβs shine a light for the 300 million people living with a rare disease, including Charcot-Marie-Tooth (CMT).
Join the #LightUpForRare movement @ 7 PM
πΈ Share a photo of your lights and tag #LightUpForRare to raise awareness! www.youtube.com/watch?v=fIvq...
The Global Biodata Coalition is running community webinars on 26 & 27 Feb to discuss their recent White Paper on biodata resource sustainability and seek feedback. View the White Paper and register for the webinar here bit.ly/40PyQ4p.
#biocuration #database #knowledgebase
Prior to the #Biocuration Careers workshop at the #Biocurtation2025 conference, we are conducting a survey of biocurators and data stewards about their jobs. Please respond here: forms.gle/DJ7irabs27em...
18.02.2025 20:17 β π 1 π 3 π¬ 1 π 0Embarrassed & ashamed to only just now learn it's #LoveDataWeek. Promise to do better next year. Until then, a corpus of 100M+ cells (and growing) of single-cell expression data, all with raw counts & standardized metadata, and all openly available? That's a lot to love. cellxgene.cziscience.com
14.02.2025 21:35 β π 0 π 0 π¬ 0 π 0Wonderful to see @kendraturkkubo.bsky.social & other friends and colleagues from my grad lab get recognized for their incredible work.
14.02.2025 16:01 β π 3 π 1 π¬ 0 π 0Thrilled to share PERFF-seq in its final form, where we expand on its sensitivity, applicability, and more! Iβm so grateful for the all-star crew (brought together by @caleblareau.bsky.social) that made this happen!! Read thread below for more! π
09.01.2025 00:58 β π 8 π 1 π¬ 0 π 0Demiltons have discussed some possibilities (mutated bird, splashing whale) but requires further investigation. Please send cut & cooked cookies.
09.02.2025 15:59 β π 1 π 0 π¬ 1 π 0Open science, data sharing, standards, etc. posts will come. But for now, I just gotta say that the fam has been loving Overcooked 2 on the Switch. Highly recommend, especially if you're looking for a safe space to throw tortillas at your spouse & yell at your kid for burning the rice.
07.02.2025 17:55 β π 0 π 0 π¬ 0 π 0Correct, CELLxGENE does not reprocess data. A big reason why contributors are motivated to submit is because the visualization will represent their analysis, their figures, etc.
CELLxGENE does not store any raw sequence data, so that would be kinda a different resource entirely.
I don't feel like I've been on @bsky.app long enough to get name-checked π
13.12.2024 22:39 β π 1 π 0 π¬ 0 π 0