Renaud Vitalis

poolfstat: Computing f-Statistics and Building Admixture Graphs Based on Allele Count or Pool-Seq Read Count Data Functions for the computation of F-, f- and D-statistics (e.g., Fst, hierarchical F-statistics, Patterson's F2, F3, F3*, F4 and D parameters) in population genomics studies from allele count or Pool-S...

Happy to announce the release of version 3.0.0 of the R package poolfstat.
This new version features hierarchical F-statistics estimation and other new functions (e.g., to simulate Pool-Seq data or to perform genome-scans), along with significant performance improvements.
Feedback is welcome!

Estimating hierarchical F–statistics from Pool–Seq data Introduced over seventy years ago, F-statistics have been and remain central to population and evolutionary genetics. Among them, FST is one of the most commonly used descriptive statistics in empiric...

🚨 New Preprint Alert! 🚨
Happy to share our new preprint, "Estimating hierarchical F–statistics from Pool–Seq data", written with Marta Coronado-Zamora and Renaud Vitalis.
Feedback and discussions are most welcome! 🙌 #PopulationGenetics #Genomics #PoolSeq

Découvrez le métier de Julien Haran, entomologiste taxonomiste au @CBGPMontpellier @Cirad : via @YouTube

youtu.be/lqt5RXWReZI?fe…

Félicitations à @FriedGuillaume, lauréat du prix Jean Dufrenoy pour ses travaux sur la flore des agrosystèmes et les plantes exotiques envahissantes !

academie-agriculture.fr/prix-medailles…

Moving to #TwitterMigration! Please join the crew!#PopGen

ecoevo.social ecoevo.social/about/more

Merci Mme la Ministre @sretailleau @sup_recherche pour la visite ce matin du @CBGPMontpellier : l'occasion de présenter nos recherches sur les ravageurs de cultures et les réservoirs de zoonoses @INRAE_France @Cirad @ird_fr @Supagro @IsiteMUSE #biodiversite #ecologie #evolution

La ministre de l'@sup_recherche, Sylvie Retailleau visitera @EcotronCNRS @CBGPMontpellier @isemevol à Montpellier ce lundi 18 juillet @CNRS @INRAE_France @ird_fr @Cirad @Supagro @umontpellier @IsiteMUSE
: via @Midilibre

midilibre.fr/2022/07/13/la-…

TRIBUNE. Crises environnementales : 1 400 scientifiques appellent les candidats à la présidentielle et les médias à sortir "des discours de l'inaction" via @franceinfo

francetvinfo.fr/monde/environn…

En rouge et noir, la génétique des pois de la coccinelle : par Arnaud Estoup, Mathieu Gautier (@CBGPMontpellier @InraMontpellier @inra_France @INRAspe) et J. Yamaguchi & @benprudhomme1 (@ibdm @cnrs) via @FR_Conversation

theconversation.com/en-rouge-et-no…

Measuring Genetic Differentiation from Pool-seq Data: the first PhD paper by @v_hivert (@INRAspe @Inra_France) is now published in @geneticsGSA! #popgen @pooledseq

genetics.org/content/210/1/…

The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird: now online @CurrentBiology by M. Gautier & A. Estoup (CBGP @inra_France @INRAspe), and J. Yamaguchi & @benprudhomme1 (@ibdm @cnrs)

cell.com/current-biolog…

The genomic basis of colour pattern polymorphism in the harlequin ladybird: a fruitful collaboration between M. Gautier & A. Estoup (CBGP @inra_France @INRAspe), and J. Yamaguchi & @benprudhomme1 (@ibdm @cnrs)

biorxiv.org/content/early/…

Our #popgen paper with IBC postdoc Florian Clemente is out in @PLOSGenetics: Inferring sex-specific demographic history from SNP data

journals.plos.org/plosgenetics/a…