LinkML Community Meeting rolling agenda
LinkML Community Meeting Agenda (and minutes) Meeting time: Third Thursday of the month (usually), 8:00 AM PT / 11:00 AM ET Zoom link: https://lbnl.zoom.us/j/97903562170?pwd=ajNZNFFRUE1COWo1Y2JZdlJt...
Please join us at the monthly LinkML Community meeting on March 20 at 8am PT / _15:00_ UTC!
Agenda: bit.ly/linkml-commu...
Host: @sierramoxon.bsky.social
Presentations:
- Pandera generator: @tpfliss.bsky.social
- MIxS schema in LinkML: Mark Miller
Zoom link is in the agenda doc. See you there!
19.03.2025 17:05 β π 4 π 1 π¬ 0 π 0
How to make a property graph schema - linkml documentationContentsMenuExpandLight modeDark modeAuto light/dark mode
Our new how-to guide shows how to build a schema in LinkML for a Property Graph (PG), such as what might be found in a graph database like Neo4J or an RDF database that supports RDF-star, such as GraphDB: linkml.io/linkml/howto...
Source for that page: github.com/linkml/linkm...
25.02.2025 23:57 β π 3 π 0 π¬ 0 π 0
linkml documentationContentsMenuExpandLight modeDark modeAuto light/dark mode
More info:
Documentation: linkml.io/linkml
Source: github.com/linkml
Issues: github.com/linkml/linkm...
Community meeting (monthly): bit.ly/linkml-commu...
Ways to contribute: linkml.io/linkml/faq/c...
Slack: see FAQ
(5 of 5)
10.12.2024 23:50 β π 2 π 1 π¬ 0 π 0
We want LinkML to be useful to a wide range of researchers, data modelers, data scientists, and beyond! We invite you to participate in the community by attending our public monthly meetings, joining our Slack channel, and submitting bugs or suggestions to our GitHub issue tracker. (4 of 5)
10.12.2024 23:49 β π 3 π 1 π¬ 1 π 0
Additionally, LinkML lets you work with and validate data in a variety of formats (JSON, RDF, TSV), with generators for serializing LinkML schemas to other frameworks. (3 of 5)
10.12.2024 23:49 β π 0 π 0 π¬ 1 π 0
As a flexible, expressive standard for describing data models ranging from value sets and flat, checklist-style standards to complex normalized data structures that use polymorphism and inheritance, LinkML enables even non-developers to create data models. (2 of 5)
10.12.2024 23:48 β π 0 π 0 π¬ 1 π 0
Figure showing how LinkML works.
Panel 1: LinkML provides a meta-data model for structuring your data.
Panel 2: LinkML models can be authored in many ways depending on your expertise.
Panel 3: LinkML auto-generates many kinds of data models and serializations.
Welcome to the LinkML community! LinkML (which stands for βLinked data Modeling Languageβ) is an #OpenSource, extensible #DataModeling framework that allows computers and people to work cooperatively to model, validate, and distribute data that is #reusable and #interoperable. (1 of 5)
10.12.2024 23:48 β π 13 π 4 π¬ 1 π 0
There is no backyard. Feed represents my commute, not my employer. Mastodon: @tpfliss@social.seattle.wa.us
The International Society for Biocuration (ISB) is a non profit organization for biocurators, developers, and researchers with an interest in biocuration. The society promotes the field of biocuration and provides a forum for informatio
Advancing how scientists create, use, and reuse microbiome data. Official Bluesky account of the NMDC.
linktr.ee/microbiomedata
Neuroscience research software engineer. Technical lead of the NWB data standard and software for neurophysiology. Passionate about building open source software and infrastructure. https://github.com/rly
He/him
I make computers do science things. I like biomedicine and data standards and AI and knowledge graphs and ontologies. I have opinions and they are my own opinions and those opinions aren't stated on behalf of any organization or government, they're just me
Knowledge Graphs, Ontologies, Data Standards, Open Data Communities
Accelerating precision medicine through Open Data Science.
https://monarchinitiative.org/
Yearly Bioinformatics Open Source Conference since 2000, run by @OpenBio.
BOSC 2026 will be July 13-14, 2026, as part of ISMB 2026
BOSC 2025 was July 21-22, 2025, in Liverpool, UK as part of ISMB/ECCB 2025
https://www.open-bio.org/events/bosc/
Program Manager, Lawrence Berkeley National Laboratory
Chair, Bioinformatics Open Source Conference (BOSC)
Berkeley Lab, Environmental Genomics and Systems Biology division. #GeneOntology #MonarchInitiative #AllianceGenome #NationalMicrobimeDataCollaborative #OBOFoundry.
official Bluesky account (check usernameπ)
Bugs, feature requests, feedback: support@bsky.app