Introducing the Vertebrate Breed Ontology (VBO)
Monarch is thrilled to share that our paper, βThe Vertebrate Breed Ontology: Toward Effective Breed Data Standardization,β has beenβ¦
Introducing the #Vertebrate #Breed #Ontology (VBO)! π π π π π π πββ¬ VBO is an #openscience, community-driven ontology representing over 19,500 breed concepts across 49 species of livestock and companion animals. π Learn more in our blog post: monarchinit.medium.com/introducing-...
#VeterinaryMedicine
06.06.2025 20:57 β π 2 π 1 π¬ 0 π 0
Rare disease gene association discovery in the 100,000 Genomes Project - Nature
A rare variant burden analytical framework for Mendelian diseases was developed and applied to data from the 100,000 Genomes Project, identifying 69 probable new diseaseβgene associations.
For #RareDiseaseDay we are excited to amplify exciting work from Monarch scientists published yesterday in Nature focused on rare disease-gene association discovery. This work led to the discovery of 69 novel gene-disease associations! 𧬠Amazing! Check out the article: www.nature.com/articles/s41...
28.02.2025 00:40 β π 6 π 3 π¬ 0 π 0
Rare apart, strong together: how Mondo brings interoperability to the rare disease community
A study conducted using data from Orphanet suggests that an estimated 300 million people, nearly 4% of the worldβs population, are affectedβ¦
Every day, but especially on Rare Disease Day 2025, the Monarch Initiative celebrates our broad community working together to tackle the challenges of identifying and treating rare diseases. Check out our #RareDiseaseDay blog: monarchinit.medium.com/rare-apart-s...
28.02.2025 00:36 β π 6 π 3 π¬ 0 π 0
Thank you @alliancegenome.bsky.social!
21.11.2024 19:03 β π 1 π 0 π¬ 0 π 0
In scientific contexts where transparency is paramount, avoid to just βmergeβ data using some fuzzy algorithmic approach. Export your matching decisions in a SSSOM-style mapping set so your consumers can see why you merged, and contest the decision. mapping-commons.github.io/sssom/
18.11.2024 12:25 β π 10 π 4 π¬ 1 π 0
Mappings are the glue of the Web of Research Data, enabling integration of information critical to the global coordination of humanity's most pressing issues such as #climate and #raredisease. Join the RDA Working Group to help promote reusable mappings! www.rd-alliance.org/groups/fair-...
21.11.2024 11:20 β π 10 π 2 π¬ 1 π 0
LinkML is an open and extensible modeling framework for creating and validating computable, reusable, and interoperable data.
Documentation: https://linkml.io/linkml
Source code: https://github.com/linkml
Mary T. and Ted D. Kellner Chair of Data Science; Professor and Director, Data Science Institute; Associate Director for Data Science, Mellowes Center; Professor, Medicine; Medical College of Wisconsin. Opinions are my own.
scientific prototyper @ German BioImaging
life scientist & wikimedian
contact info at https://tiago.bio.br
also in https://wikis.world/@tiagolubiana
Advancing the promise of the Human Genome Project by interpreting the landscape of human genetic variation.
https://www.varianteffect.org
https://www.linkedin.com/company/atlas-of-variant-effects-alliance
Program Manager, Lawrence Berkeley National Laboratory
Chair, Bioinformatics Open Source Conference (BOSC)
https://www.pombase.org/ Knowledgebase for Schizosaccharomyces pombe (a fission yeast). Supporting scientific discovery for cell-level processes; #OpenScience, #FAIR data #CommunityCuration; Monitoring #UnknownProteins; Elixir and GBC Core Data Resource.
Working on OpenCloning, an Open Source web application to plan and document cloning.
https://opencloning.org/
Open Source in science enthusiast. Previously PomBase, yeast genetics, image analysis and cytoskeleton.
Trying to describe a eukaryotic cell at https://www.pombase.org/
https://orcid.org/0000-0001-6330-7526
𧬠Human Data Sharing Expert
π± Community & Collaboration Builder
π©βπ» Bioinformatics & Metadata Enthusiast
π Open Science Advocate
πΊπΈ in π¬π§
the Node is a community site for and by developmental and stem cell biologists, covering news, meetings, and research. Hosted by Development @dev-journal.bsky.social @biologists.bsky.social. #DevBio #StemCell
https://thenode.biologists.com
Bgee is a database at SIB and UNIL to retrieve and compare gene expression patterns in multiple animal species.
bgee.org
The International Society for Biocuration (ISB) is a non profit organization for biocurators, developers, and researchers with an interest in biocuration. The society promotes the field of biocuration and provides a forum for informatio
BioGRID is a comprehensive #biomedical repository for curated #protein, #genetic and #chemical interactions | Funding @NIH_ORIP
& @CIHR_IRSC | #CRISPR #opendata
https://thebiogrid.org
https://orcs.thebiogrid.org
The International Mouse Phenotyping Consortium (IMPC) is an international programme to find the function of every protein-coding gene in the mouse genome.
The Rat Genome Database (RGD) was established in 1999 and rapidly became the premier site for genetic, genomic, phenotype, and disease-related data generated from rat research.
The Saccharomyces Genome Database (SGD) provides comprehensive biological information for the budding yeast Saccharomyces cerevisiae along with search and analysis tools to explore these data, enabling scientific discovery.
The Gene Ontology (GO, geneontology.org) knowledgebase is the worldβs largest source of information on gene function. Our mission is to develop a comprehensive, computational model of biological systems, ranging from the molecular to organism level.
The Alliance of Genome Resources supports biological science via data integration, standardization of data models and interfaces, and unified outreach.
Find us at https://www.alliancegenome.org.