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Jon Agirre

@glycojones.bsky.social

YSBL, Department of Chemistry, University of York, UK. I make, modify and fix stuff. Acta Cryst F main editor with Mark and Cristy. CCP4wg2 chair with Arnaud. Analyse glycan structures with Privateer: https://privateer.york.ac.uk #RealTimeChem [He/Him]

1,483 Followers  |  1,023 Following  |  86 Posts  |  Joined: 09.05.2024  |  1.9988

Latest posts by glycojones.bsky.social on Bluesky

One of the coolest things going on here is that the GitHub repos contain Jupyter notebooks for you to try their software. In case you don't have Jupyter installed or don't know what it is: you can always upload the notebooks to Google Colab and run everything on their cloud services :)

22.10.2025 15:58 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Great to see this article by @guptapenn.bsky.social is out! Kushol helped us interview @xtalmaker.bsky.social Vivian Stojanoff and @gabbygrowsxtals.bsky.social who published an article on careful sample preparation in crystallisation experiments, also part of #SAMPREP
www.youtube.com/watch?v=m34R...

10.10.2025 10:07 โ€” ๐Ÿ‘ 4    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Structure of Plasmodium vivax N-myristoyltransferase with the  NMT inhibitor IMP-1088
YouTube video by International Union of Crystallography Structure of Plasmodium vivax N-myristoyltransferase with the NMT inhibitor IMP-1088

I'm incredibly proud to present this @actacrystf.iucr.org interview with Alex Mendez and Cydni Bolling on their first paper ever! The interview was co-led by Dr Graham Chakafana from Hampton University in the USA, who supervised the authors' undergraduate research.
www.youtube.com/watch?v=5rjI...

24.09.2025 16:30 โ€” ๐Ÿ‘ 6    ๐Ÿ” 5    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preview
Structure of Plasmodium vivax N-myristoyltransferase with inhibitor IMP-1088: exploring an NMT inhibitor for antimalarial therapy The 1.8โ€…ร… resolution ternary structure of P. vivax N-myristoyltransferase in complex with IMP-1088 and myristoyl-CoA is presented. IMP-1088 is an N-myristoyltransferase inhibitor from a family of inhi...

The article we're discussing is "Structure of Plasmodium vivax N-myristoyltransferase with the NMT inhibitor IMP-1088", You can read the paper (๐Ÿ”“<- yes, it's open access!) here: journals.iucr.org/f/issues/202...

24.09.2025 16:30 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Structure of Plasmodium vivax N-myristoyltransferase with the  NMT inhibitor IMP-1088
YouTube video by International Union of Crystallography Structure of Plasmodium vivax N-myristoyltransferase with the NMT inhibitor IMP-1088

I'm incredibly proud to present this @actacrystf.iucr.org interview with Alex Mendez and Cydni Bolling on their first paper ever! The interview was co-led by Dr Graham Chakafana from Hampton University in the USA, who supervised the authors' undergraduate research.
www.youtube.com/watch?v=5rjI...

24.09.2025 16:30 โ€” ๐Ÿ‘ 6    ๐Ÿ” 5    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Post image

The World Directory of Crystallographers (WDC) offers an unparalleled compilation of expertise in the field.
Itโ€™s free to join and open to all crystallographers and other scientists employing crystallographic methods.
Add your name and be part of the mosaic:
๐Ÿ”— www.iucr.org/people/wdc

12.09.2025 13:04 โ€” ๐Ÿ‘ 3    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
DLS/CCP4 Workshop 2025

Just a few days left to register for the next Diamond/CCP4 Data Collection and Structure Solution Workshop! This is an excellent training course delivered at a unique location and close to the most wonderful time of the year. It also has LOTS of tutors per student! www.ccp4.ac.uk/schools/DLS-...

03.09.2025 16:11 โ€” ๐Ÿ‘ 2    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
DLS/CCP4 Workshop 2025

Just a few days left to register for the next Diamond/CCP4 Data Collection and Structure Solution Workshop! This is an excellent training course delivered at a unique location and close to the most wonderful time of the year. It also has LOTS of tutors per student! www.ccp4.ac.uk/schools/DLS-...

03.09.2025 16:11 โ€” ๐Ÿ‘ 2    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
FabG4 from Mycolicibacterium smegmatis
YouTube video by International Union of Crystallography FabG4 from Mycolicibacterium smegmatis

Indeed, our journal carries these contributions with pride. This might be a good time to revisit our video chat with Xinping, Prashit and Krystle (last year! time flies) www.youtube.com/watch?v=eZhv...

01.08.2025 11:07 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Two scientists looking at a computer screen

Two scientists looking at a computer screen

Excited to share this story on the protein crystallography CURE I developed and have been teaching for the last 3 years!

www.vassar.edu/news/student...

This course is supported by my #CottrellScholars Award from RCSA.

@rescorp.org
@vassar.bsky.social

#grantsinaction #biochemistry

31.07.2025 14:15 โ€” ๐Ÿ‘ 25    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

We were pleased to publish some of the results from this course, some in our recent 'Empowering education through structural genomics' focused issue: journals.iucr.org/special_issu...

31.07.2025 15:20 โ€” ๐Ÿ‘ 8    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Happy World Rain Day! Itโ€™s rainingโ€ฆ

โ€“ Cats and dogs (English)
โ€“ Old ladies and sticks (Welsh)
โ€“ Like a pissing cow (French)
โ€“ As from Esteriโ€™s ass (Finnish)
โ€“ Penguins headfirst (Uruguayan Spanish)
โ€“ Pilot whales (Faroese)
โ€“ Chair legs (Greek)
โ€“ Wheelbarrows (Czech)
โ€“ Men (hallelujah)

29.07.2025 09:17 โ€” ๐Ÿ‘ 1657    ๐Ÿ” 415    ๐Ÿ’ฌ 110    ๐Ÿ“Œ 60

๐Ÿด๓ ง๓ ข๓ ฅ๓ ฎ๓ ง๓ ฟ๐Ÿด๓ ง๓ ข๓ ฅ๓ ฎ๓ ง๓ ฟ

27.07.2025 20:07 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Thanks for sharing โ€” lovely photos.

27.07.2025 19:27 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

AI chat bots behaving like science fiction AI chat bots because they were once trained on Asimov

25.07.2025 22:49 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Lost for words ๐Ÿ˜ž

22.07.2025 18:34 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Interviews with Authors - YouTube

Just realised that we've been doing Interviews With Authors on YouTube for a whole year!

I'd really appreciate receiving comments about these, e.g. suggest a structural biologist you would like us to interview

Here's a playlist with all the videos we've done so far: www.youtube.com/playlist?lis...

18.07.2025 09:37 โ€” ๐Ÿ‘ 6    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
ACA2025 attendees wearing cowboy hats in front of a billboard that says "See you in Calgary!"

ACA2025 attendees wearing cowboy hats in front of a billboard that says "See you in Calgary!"

ACA2025 attendee wearing cowboy hat in front of a billboard that says "See you in Calgary!"

ACA2025 attendee wearing cowboy hat in front of a billboard that says "See you in Calgary!"

ACA2025 attendees wearing cowboy hats in front of a billboard that says "See you in Calgary!"

ACA2025 attendees wearing cowboy hats in front of a billboard that says "See you in Calgary!"

ACA2025 attendee wearing cowboy hat in front of a billboard that says "See you in Calgary!"

ACA2025 attendee wearing cowboy hat in front of a billboard that says "See you in Calgary!"

Giddy up to Calgary! Stop by our #IUCr2026 booth at #ACA2025 to gear up for the 2026 Conference to get some Calgary Stampede merch, plan your trip, meet other attendees and more!

20.07.2025 15:28 โ€” ๐Ÿ‘ 15    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Fascinating. Microsoft emailed me to say it was raising the price of Microsoft 365, but when i went to cancel it offered me me the old price โ€” without all the AI bullshit.

Itโ€™s forcing AI on everyone and making them pay more for it, then only telling them they donโ€™t have to if they try to cancel.

19.07.2025 03:11 โ€” ๐Ÿ‘ 4161    ๐Ÿ” 1577    ๐Ÿ’ฌ 39    ๐Ÿ“Œ 139

Welcome to the new normal in Erurope

Please use mosquito repellent

19.07.2025 06:48 โ€” ๐Ÿ‘ 6    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Interesting preprint, by the way. I will try to read it next week.

18.07.2025 16:06 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Interviews with Authors - YouTube

Just realised that we've been doing Interviews With Authors on YouTube for a whole year!

I'd really appreciate receiving comments about these, e.g. suggest a structural biologist you would like us to interview

Here's a playlist with all the videos we've done so far: www.youtube.com/playlist?lis...

18.07.2025 09:37 โ€” ๐Ÿ‘ 6    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

#glycotime

17.07.2025 15:30 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

And here is the interview with Gabby, Vivian and Sarah where they discuss their article and its connection to the ACA SAMPREP workshop! bsky.app/profile/glyc...

14.07.2025 09:05 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Please give the interview a watch! Thumbs-up and comments much appreciated too ๐Ÿ˜„

14.07.2025 09:02 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Preparing for successful protein crystallization experiments All crystal-based structural biology methods, including X-ray crystallography, serial synchrotron and serial femtosecond crystallography, and electron diffraction, require the preparation of biomolecu...

The authors wrote a wonderful review for a dedicated @actacrystf.iucr.org issue that includes contributions from #ACA2023 SAMPREP workshop attendees journals.iucr.org/f/issues/202... โ€“ edited by @guptapenn.bsky.social , who also joined us for the interview and asked some great questions.

14.07.2025 09:02 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preparing for successful protein crystallization experiments
YouTube video by International Union of Crystallography Preparing for successful protein crystallization experiments

As the community gets ready for #ACA2025, we're proud to present this interview with @gabbygrowsxtals.bsky.social Vivian Stojanoff and @xtalmaker.bsky.social on how to prepare for successful protein crystallisation experiments! ๐Ÿฅณ๐Ÿฅณ youtu.be/m34RI500OFU?...

14.07.2025 09:02 โ€” ๐Ÿ‘ 11    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3

Excited that our article made the cover of the July issue of @actacrystf.iucr.org!

Congrats to my coauthors @gabbygrowsxtals.bsky.social & Vivian Stojanoff!

Grateful for #NIH NIGMS R24 National Resource grant that enables workshops like the 2023 SAMPREP workshop @ @acastructuralsci.bsky.social

03.07.2025 19:18 โ€” ๐Ÿ‘ 12    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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๐ŸšจWe've updated our preprint "Frustration, Dynamics, and Catalysis" โœจ We appreciate RT โ˜บ๏ธ

A short ๐Ÿงต1/8: We expanded the conceptual connection between the energy landscapes theory and catalysis, added new figures, and clarified how local frustration shapes enzyme function.
arxiv.org/pdf/2505.00600

09.07.2025 09:17 โ€” ๐Ÿ‘ 11    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Weโ€™ve got some more ECR interviews coming โ€” watch this space!

08.07.2025 09:20 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@glycojones is following 20 prominent accounts