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Claire Menard

@clairecodes.bsky.social

PhD Candidate studying โ€œjumping genesโ€ in maize ๐ŸŒฝ | Hirsch Lab | Bioinformatics & Genomics | she/her

179 Followers  |  151 Following  |  7 Posts  |  Joined: 23.01.2024  |  1.7079

Latest posts by clairecodes.bsky.social on Bluesky


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EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis - BMC Genomics BMC Genomics - Transposable elements (TEs) are major components of plant genomes, shaping genome architecture, gene regulation, and evolutionary innovation. While the Extensive de novo TE Annotator...

#TEsky EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis doi.org/10.1186/s128...

30.01.2026 15:10 โ€” ๐Ÿ‘ 9    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

#TESKY

08.01.2026 19:24 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I am looking at graduating this year so if you know of any postdoc opportunities Iโ€™m in the process of nailing one down. Iโ€™ll be there until Tuesday morning if anyone wants to meet or catch up!

08.01.2026 19:23 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Iโ€™m headed to #PAG33 in San Diego, CA this week! Very excited to present a poster on some LTR TE family clustering titled โ€œFull Sequence Clustering Reveals Hidden Structural Diversity and Evolutionary Dynamics in LTR Retrotransposon Familiesโ€. Iโ€™ve attached the abstract if youโ€™d like to read more.

08.01.2026 19:23 โ€” ๐Ÿ‘ 10    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Thank you!! ๐Ÿ˜Š

06.08.2025 18:44 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Absolutely ๐Ÿ˜‰

03.08.2025 15:34 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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GitHub - HirschLabUMN/SWIFTE Contribute to HirschLabUMN/SWIFTE development by creating an account on GitHub.

Here is the GitHub link too. github.com/HirschLabUMN... #TEsky

02.08.2025 18:43 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

My first first author manuscript has posted! Iโ€™m very excited to share SWIF-TE with yall. It is a fast, memory efficient tool to identify novel TE insertions from short-read data. ๐Ÿงฌ #TEworldwide #transposons

02.08.2025 18:42 โ€” ๐Ÿ‘ 78    ๐Ÿ” 19    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 3
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New Resource: "Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers" rdcu.be/d7YSt

11 genomes of wild and domesticated pepper: transposable elements have shaped the evolution of genome structure.

29.01.2025 23:34 โ€” ๐Ÿ‘ 43    ๐Ÿ” 18    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

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