Some of my work from the first year of my PhD is out as a preprint, please check it out!
Virus evolution is rapid and prolific both across and within individuals. However, a significant amount of variation remains hidden due to computational bottlenecks in read-alignment and variant calling
1/n
08.12.2025 15:03 β π 6 π 3 π¬ 1 π 1
Congrats to Bryce Kille on absolutely smashing his PhD defense at Rice today with advisor @treangen.bsky.social ! Collaborating with Bryce over the past few years has been an absolute delight ππππ
27.01.2025 20:56 β π 33 π 6 π¬ 2 π 0
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We're hiring: Assistant Professor in Evolutionary Biology. Come join us: Excellent and supportive colleagues at a private university with a beautiful campus and great students! please RT
#RiceEEB #EEBjobs #phdchat #facultyjobs
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21.08.2024 14:54 β π 16 π 31 π¬ 0 π 3
Had a great lab retreat on Saturday at rice together with @svillapol.bsky.social and @treangen.bsky.social lab. Amazing talks, discussions and overlap of interests. Won't be the last one :)
29.04.2024 13:45 β π 5 π 2 π¬ 0 π 0
10 years on, @bkille.bsky.social @treangen.bsky.social and co. have refreshed Parsnp with a version 2! Build a core genome multi-alignment for 100k SARS genomes or 1k Mtb genomes in under an hour π¨
01.02.2024 13:26 β π 32 π 16 π¬ 2 π 0
Distinguished Lecture: Dr. Adam Phillippy
A Ken Kennedy Institute Distinguished Lecture by Dr. Adam Phillippy, Senior Investigator at National Human Genome Research Institute, National Inst...
I was waiting for a great topic for my first Bluesky post, and I cannot thing of a better one: Iβm thrilled to be hosting @aphillippy.bsky.social at Rice University today and looking forward to his talk at 4pm! events.rice.edu/event/345896...
14.11.2023 15:59 β π 13 π 2 π¬ 2 π 0
"Minmers are a generalization of minimizers that enable unbiased local jaccard estimation" aka MashMap3 with Bryce Kille, @erikg.bsky.social, and @treangen.bsky.social is now accepted in Bioinformatics! Many thanks to the reviewers for their very careful reviews doi.org/10.1093/bioi...
12.09.2023 19:43 β π 27 π 15 π¬ 0 π 1
In a sequence gaze daze
Bfx in HTX π§¬π₯οΈ
Opinions my own π¦
https://tiszalab.github.io/
Here for #bioinformatics / #computationalBiology of #Genomics, #Oncology and #Virology. Also loves #dataViz and open-source software.
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Excellence in computer science since 1984. Rice Computer Science is a department in the George R. Brown School of Engineering and Computing.
CAMRI is a leader in pioneering microbiome research with current strengths in women's and infant health, as well as the development of novel therapeutics. CAMRI is part of the Institute for Genome Sciences at the University of Maryland School of Medicine.
Bioscientist. Associate Professor at Rice University. Neural crest, zebrafish, enteric nervous system, gut-brain axis, neurodevelopment. Editor-in-Chief, Differentiation.
The #OpenScience journal from BGI & OUP publishing articles using/generating large datasets. And linked to GigaDB #opendata hosting/analysis repository.
Website: http://gigasciencejournal.com
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Head of the Applied Neurogenomics group at @NIH @NIA @CARD
| π§ 𧬠Using Long Reads to better understand the genomics of ADRD | Views/tweets my own
β Permanent Researcher / INRIA Start. Faculty @ INRIA Rennes π«π· β
BioInfo/CompBio: algorithms, genomics, pathogens & rapid diagnostic of antibiotic resistanceγ https://brinda.eu | https://github.com/karel-brinda γ
Professor, Emory University Schools of Medicine, Atlanta.
Microbiology, genomics, genetics, bioinformatics.
https://scholar.google.com/citations?user=XF5C7cgAAAAJ&hl=en
The Center for Microbial Medicine at the Childrenβs Hospital of Philadelphia is dedicated to finding cures and improving pediatric health through the lens of the microbiome.
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Trying to keep up with the literature. Infection, microbiome, bioinformatics and multi-omics.
We study antiviral immunity and viral disease pathogenesis. We are developing mucosal vaccine strategies to prevent infection and transmission. #COVID19 #longCOVID #vaccines
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