@pluskal-lab.org.bsky.social
Group Leader at the Institute of Organic Chemistry and Biochemistry (IOCB Prague @iocbprague.bsky.social). Plant biochemistry, metabolomics, genomics, bioML, etc. https://www.pluskal-lab.org
Yesterday @roman-bushuiev.bsky.social visited our lab. He gave a seminar talk about his recent work on DreaMS (www.nature.com/articles/s41...), and provided a hands-on training to my lab members. Looking forward to what we will discover using this awesome tool!
01.08.2025 08:37 — 👍 10 🔁 3 💬 1 📌 0My pleasure! 🙂
27.06.2025 13:58 — 👍 2 🔁 0 💬 0 📌 0
At #ASMS2025, we presented a next-gen workflow pairing the #timsMetabo MoRE (Mobility Range Enhancement) with #mzmine and #DreaMS
Compared to conventional LC-MS2, the data delivered:
- 84% more detected features
- 5.7× more MS² spectra
- 3× more spectral matches
Read the full poster to learn MoRE
🚨 MetaboART 🎨 2025 – Deadline Extended:
🗓️ Submissions now open until June 13!
Two categoried:
👤 Human-Created // 🤖 AI-Generated
🏆Winner @ #MetSoc25 on June 24
Details👉 tinyurl.com/dh37xt78
📩info.emn@metabolomicssociety.org
#mzmine 4.7 is now available!
This release brings our most significant improvement in memory efficiency to date, unlocking new capabilities for analyzing large-scale datasets.
Join us for a live software demo at our booth today and tomorrow at 12:00/noon during #ASMS2025
Today is the registration deadline for our bioML symposium on Aug 21-22. Last chance to secure your spot! More info at tinyurl.com/bioMLPrague25
30.05.2025 15:01 — 👍 11 🔁 3 💬 0 📌 0
⚛️ @pluskal-lab.org from IOCB Prague, together with his student @roman-bushuiev.bsky.social and colleagues from #CIIRC CTU, Josef Šivic and @anton-bushuiev.bsky.social, have developed a machine learning model called #DreaMS – which accelerates the analysis of previously unknown molecules.
28.05.2025 13:42 — 👍 11 🔁 5 💬 1 📌 0
Mass spectrometry is a key method to discover and identify molecules in biological and environmental samples. Yet, >90% of mass spectra remain hard to interpret. In our recent paper, we present DreaMS — a foundation model to interpret mass spectra of small molecules.
www.nature.com/articles/s41...
This paper represents a great effort by @roman-bushuiev.bsky.social and his brother @anton-bushuiev.bsky.social. The DreaMS foundation model for mass spectra of small molecules now opens lots of avenues for possible downstream applications. It might be a game changer for computational metabolomics.
24.05.2025 08:21 — 👍 53 🔁 20 💬 0 📌 1
The Mass Spectrometry Query Language (MassQL) is an open-source language for instrument-independent searching across mass spectrometry data for complex patterns of interest via concise and expressive queries without the need for programming skills.
www.nature.com/articles/s41...
Join us for a power-packed software workshop where we’ll be breaking boundaries in multi-vendor MS analysis using #mzmine at #ASMS2015
Led by experts @robinschmid.bsky.social and @ansgarkorf.bsky.social
𝗡𝗼 𝘀𝗶𝗴𝗻–𝘂𝗽 𝗿𝗲𝗾𝘂𝗶𝗿𝗲𝗱, 𝗷𝘂𝘀𝘁 𝗱𝗿𝗼𝗽 𝗯𝘆 𝘁𝗵𝗲 𝗯𝗼𝗼𝘁𝗵 𝗮𝘁 𝟭𝟮 𝗺𝗶𝗱𝗱𝗮𝘆.
See you there! 👋
Get Ready! Only 3 weeks to go until #ASMS2025!
Our team will be showcasing our latest developments in #mzmine at this year’s conference.
Stop by Booth 210 for live demonstrations and insights into how you can streamline your data processing across multiple vendors, adding speed and confidence.
🤝 IOCB Prague is hiring – we are looking for an outstanding Junior Group Leader in Biosciences to join our vibrant scientific community.
See more ► www.uochb.cz/en/open-posi... ⤵️
#openposition #iocbprague #iocb #researchjobs #biosciences
Also thanks to Mélissa Nothias (LMR Naturals by IFF) for her great keynote lecture!
29.04.2025 09:35 — 👍 2 🔁 0 💬 0 📌 0
Another year, another @mzmine.bsky.social workshop at
@iocbprague.bsky.social! Both new and advanced users are learning about the latest mzmine features from our amazing instructors @ansgarkorf.bsky.social, Josh Smith,
@titodamiani.bsky.social, and @roman-bushuiev.bsky.social.
Back in July 2023 we organized a small bioML symposium at @iocbprague.bsky.social, and it turned out to be a very pleasant and successful event. This summer we are following up with a great line-up of speakers. Please register for free, deadline May 30. tinyurl.com/bioMLPrague25
11.04.2025 11:34 — 👍 17 🔁 8 💬 0 📌 0
#mzmine
Rapid MALDI-MS/MS-Based Profiling of Lipid A Species from Gram-Negative Bacteria Utilizing Trapped Ion Mobility Spectrometry and mzmine (Rudt, Froning, @robinschmid.bsky.social, @pluskal-lab.org)–AC: doi.org/10.1021/acs....
@iocbprague.bsky.social @mzmine.bsky.social @uni-muenster.de
We were hosting a MZmine workshop within our INTER-MICRO /Talking microbes/ OP JAK project.
Presenters: Zdeněk Kameník (Laboratory of Antibiotic Resistance and Microbial Metabolomics IMIC);
Tito Damiani and Joshua Smith (Tomáš Pluskal group @iocbprague.bsky.social)
Learning new things #intermicro
We will bring together seasoned mzmine users, newcomers and developers to exchange knowledge, share best practices, and discuss the ways mzmine powers cutting-edge research.
We will also host keynote speakers Dr. Annika Jagels (LifeMine Therapeutics) and Dr. Mélissa Nothias (LMR Naturals by IFF).
Only a few days remain to register for the first official mzmine Community Meeting, taking place on April 28-29 at @iocbprague.bsky.social.
Registration:
docs.google.com/forms/d/e/1F...
Program:
docs.google.com/document/d/1...
This is the first paper from our Piper-series, many more to follow. A great effort by multiple lab members!
09.03.2025 16:52 — 👍 7 🔁 2 💬 0 📌 0
🚨 Abstract deadline alert! 🚨
Friendly reminder to submit your oral abstract before March 6 – don’t miss the chance to showcase your work at hashtag#MetSoc2025!
Registration is now open: lnkd.in/eFZGi4CK
#Metabolomics #EMN
🤝 In April 2024, brothers Roman and Anton Bushuiev from the teams of @pluskal-lab.org @iocbprague.bsky.social and Josef Šivic #CIIRC_CTU initiated a collaboration among 14 research institutes across the globe to benchmark #AI methods for the discovery of molecules from mass spectrometry data. 1/2
20.02.2025 14:06 — 👍 11 🔁 5 💬 1 📌 1
We will be hosting the first @mzmine.bsky.social Community Meeting at @iocbprague.bsky.social. Please register if you wish to learn about the latest developments in mzmine. More info: docs.google.com/document/d/1...
17.02.2025 16:21 — 👍 28 🔁 23 💬 0 📌 0
New #mzmine release out now! Matching millions of reference spectra against thousands of samples was never faster. Go and test it today.
Download: github.com/mzmine/mzmin...
youtu.be/AFv55sUn9Lg
MassSpecGym is the largest publicly available collection of mass spectra data with 231K spectra for 29K unique molecular structures. 33% of the dataset was generated from newly measured, in-house data.
🛡️The dataset is now certified on Polaris! polarishub.io/datasets/rom...
youtu.be/G8ZnVRm0ogc
The new POMBOX kit is now available from @addgene.bsky.social
To plan your cloning with this and other Golden Gate kits, you can try the kit template in #ShareYourCloning
🔗 Visit shareyourcloning.org
👉 Go to Templates > Moclo
🎞️ Full demo video www.youtube.com/watch?v=n0he...
#pombe #MoClo
🏆 Cenu #Neuron pro mladé vědce získal v neděli také Dr. Tomáš Pluskal z našeho ústavu.
Více na ► www.uochb.cz/cs/novinky/6... ⤵️
#cenaneuron #iocb #iocbprague #uochb #akademievedcr
👏 Hlavní Cenu Neuron 2024 získal tentokrát uznávaný fyzikální chemik prof. Pavel Jungwirth z našeho ústavu.
V oboru chemie uspěl také Dr. Tomáš Pluskal z ÚOCHB.
Blahopřejeme nejen jim, ale také všem dalším oceněným!
Více na ► cenyneuron2024.cz ⤵️
Has Bluesky replaced X for scientists? Take Nature’s poll
“The research community has flocked to the social-media platform Bluesky. Tell us about your experience.”
www.nature.com/articles/d41...
