Turns out that when a group of interesting and enthusiastic scientists who care about open standards sit together for a couple of days, they do great things 🔥🔥🔥
11.03.2025 21:45 — 👍 11 🔁 2 💬 0 📌 0
image of a PAL text pattern from wikipedia being shown in the napari viewer. Source: https://en.wikipedia.org/wiki/Test_card
Please hold while we ready the 0.6.0 release… 😅
12.03.2025 03:53 — 👍 13 🔁 3 💬 2 📌 0
For our spatial omics enthousiasts we have a massive speed improvement for loading polygon geometries (currently 100x speed improvement).
Polygon triangulation can now also include holes which opens up naparifor more use in the geoscience community and we have a command palette among other things!
12.03.2025 08:02 — 👍 2 🔁 0 💬 0 📌 0
n-dimensional image viewer for Python
Biomedical Computer Vision & Language Models, scads.ai / Leipzig University, also NFDI4BIOIMAGE, NEUBIAS/GloBIAS, GPUs, AI, ML 🔬🖥️🚀 views:mine
Image Analysis Expert at the Friedrich Miescher Institute for Biomedical Research (FMI), Basel (Switzerland) | bio-image analyst | (he/him)
LinkML is an open and extensible modeling framework for creating and validating computable, reusable, and interoperable data.
Documentation: https://linkml.io/linkml
Source code: https://github.com/linkml
Account of the Saez-Rodriguez lab at EMBL-EBI and Heidelberg University. We integrate #omics data with mechanistic molecular knowledge into #opensource #ML methods
Website: https://saezlab.org/
GitHub: https://github.com/saezlab/
Post-doctoral scientist at Heidelberg University Hospital @uniheidelberg.bsky.social 🇩🇪 | Previously @wehi-research.bsky.social 🇦🇺🐨 | Spatial Omics 🧬 | Microscopy 🔬| Cancer Researcher 👩🔬 | Can be tempted out of the lab with free food | she/her
PhD student working on spatial omics applications in cardiology | nf-core pipelines | Nextflow ambassador
PhD at Schapiro lab in Heidelberg | Spatial biology | Bioinformatics | Tissue organization
Computer scientist with a bias towards machine learning and a high need for variance in application domains. Fond of woodworking and musical instruments.
https://saeyslab.sites.vib.be/
Greek/American/German-ish in Spain.
Now PD in Barcelona. Prev PhD in Zurich.
community > monopolies. passion > prestige. creativity > recipes. analog > digital. music > all.
Associate prof comp biologist @JHUBME. Founder @cuSTEMized. Editor @PLOSCompBiol. Alum @HarvardDBMI @blairmagnet. Doing art like a science, science like an art.
Statistician, Computational Biologist, R |> Bioconductor
https://www.huber.embl.de
Textbook: Modern Statistics for Modern Biology https://www.huber.embl.de/msmb/ (with @sherlockpholmes.bsky.social)
Technical Director – @gerbi-gmb.de | Standardizing open bioimaging data infrastructure
TA1 lead for @nfdi4bioimage.bsky.social
#OSS Maintainer for @openmicroscopy.org and @zarr.dev
Research Software Engineer in bioimaging // I run the Human Organ Atlas (@humanorganatlas.bsky.social) // cyclist // walker
🔬 studying form and function at ETH D-BSSE
🏝️ steering council and core dev of napari
https://kevinyamauchi.github.io/
Image Analysis and Data Management at the Department of Biosystems Science and Engineering of ETH Zürich in Basel
Core dev and co-founder napari.org
Core dev scikit-image.org
Co-author elegant-scipy.org
Research Fellow at https://www.monash.edu/researchinfrastructure/eresearch […]
[bridged from https://fosstodon.org/@jni on the fediverse by https://fed.brid.gy/ ]
Bioimage Analyst / RSE at the SciLifeLab BioImage Informatics Unit
OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
Assistant Professor in Bioimaging and Data Analysis and Director of the BioVisionCenter at UZH; Research Group Leader at EMBL-EBI. Loves image analysis, mountains, and birds.
