Marvin Albert

I'm happy to release into the wild my new professional and personal website marcodallavecchia.gitlab.io/web/

I finally found some time to reorganize ideas and redo the framework with @quarto.org

You can read my first blog post on the website here!
marcodallavecchia.gitlab.io/web/blog/web...

📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

Halfway to I2K is BACK, friends of all kinds! Last year, 650 people attended 30+ TOTALLY FREE image analysis workshops of all kinds, across many timezones.

If you make image analysis software and want to teach it, workshop submissions are open now! We'd love to have your tool highlighted.

Do you want to listen to me ramble about Pasteur's Image Analysis Hub (research.pasteur.fr/en/team/imag...)?
Let's meet online next Monday. I will present how we work, and what we have learned in delivering bioimage analysis support in the past 7 years.

And we'll round off 2025 on November 26th at 4pm with guest presentations by Giliane Rochat about lightsheet processing for OME-Zarrs & Flurin Sturzenegger about the ZMB Fractal task collection. (5/6)

GitHub - fmicompbio/ez_zarr: GIve easy, high-level access to ome-zarr fileset GIve easy, high-level access to ome-zarr fileset. Contribute to fmicompbio/ez_zarr development by creating an account on GitHub.

We'll start the season next week on September 24th at 4pm with a guest presentation by @csoneson.bsky.social & @silviabarbiero.bsky.social about the ez_zarr library (see github.com/fmicompbio/e...) (3/6)

GitHub - multiview-stitcher/multiview-stitcher: A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D. A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D. - multiview-stitcher/multiview-stitcher

We'll have the second meeting on October 28th at 4pm with a guest presentation by @m-albert.bsky.social about multiview-stitcher (github.com/multiview-st...) & dask-image (image.dask.org/en/latest/) (4/6)

Flyer for the Open Bioimaging Practices Meetups. 1. September 24th at 4pm: Guest presentation by Charlotte Soneson & Silvia Barbiero 2. October 28th at 4pm: Guest presentation by Marvin Albert 3. November 26th at 4pm: Guest presentations by Giliane Rochat & Flurin Sturzenegger

Are you working with OME-Zarrs in Switzerland?
We're running a series of community events in the context of the BioFAIR project of the BioVisionCenter: Monthly Open Bioimaging Practices Meetups with presentations by us & community members. Starting off with 3 cool events this fall (see image) (1/6)

Ready to shape the future of AI in life science? The next call for DDLS Fellows is opening soon, offering an outstanding opportunity for ambitious young researchers to establish their own internationally competitive research groups. This round has a...

🚨 Wow, that really sounds like an amazing opportunity… If I were a bit younger, I would start preparing my application already… 😮

www.scilifelab.se/news/ready-t...

Save the date! The @pasteur.fr Pasteur course on image analysis is announced:

It will happen from the 1st of June to the 5th 2026.

This year there will be only one track: the Early Career Investigator track (beginners). 👇

CLEM-Reg: an automated point cloud-based registration algorithm for volume correlative light and electron microscopy - Nature Methods CLEM-Reg automates the three-dimensional alignment of volume correlative light and electron microscopy datasets by leveraging probabilistic point cloud registration techniques for fast and accurate re...

Super happy to see CLEM-Reg out in @natmethods.nature.com! A short thread on the algorithm behind it and how to try it out for yourself🧵(1/9)

www.nature.com/articles/s41...

Flagellar gliding in choanoflagellates Freire-Delgado and Brunet discover a new mode of cell motility in choanoflagellates, the closest relatives of animals. Under mild confinement, choanoflagellate move over surfaces without cell deformat...

New short paper from our lab @currentbiology.bsky.social, in which we discover of a new mode of cell motility for choanoflagellates: flagellar gliding. www.cell.com/current-biol... - A 🧵

We (with @nicolasdray.bsky.social @zenlabpasteur.bsky.social) are happy to release officially FishFeats, our #napari plugin to streamline 3D smFish/RNA quantification! 🎊
Available here: github.com/gletort/Fish... user documentation: gletort.github.io/FishFeats/

Thrilled to announce that I'm back in Buenos Aires and open for image & data analysis projects!

My focus is turning images from bioscience, ecology, & more into actionable data. I'm available for collaborations in Argentina and internationally.

Check out my portfolio and contact:
acorbat.github.io

Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland

We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... 

#bioimaging #openscience #OMENGFF #OMEZarr

(1/x 🧵)

Once is an exception, twice is a trend, thrice is a tradition!

Save the date for our now-traditional annual OME-NGFF extravaganza in Zurich!

Whether you’ve just heard about OME-NGFF and are curious to learn more or if you are working with it every day, there is something for everyone this year!

I'll be there! Giving a talk! and hacking on _something_ for a few days!

Topics tagged mesospim Topics tagged mesospim

📣We have opened our official User Forum: forum.image.sc/tag/mesospim
In this forum you can connect with 🔬developers and the image analysis experts. Ask your burning questions about the #mesoSPIM hardware, software, and image processing, or help the beginners to get started!
Tip: use project tags!

A really nice interview with Juan. Important messages:
- "I think that universities are missing a trick in not investing more in this type of work [open source software development]"
- "Never code alone."

YouTube video by Euro-BioImaging Communication Towards a nationwide core facility offering bioimage analysis services| Image Analysis session

A few months ago @eurobioimaging.bsky.social organized the 'Image Data Community Days 2025' during which I could present our work within @france-bioimaging.bsky.social, creating a nationwide, remotely operating core facility for Bioimage Analysis.

youtu.be/xtLHiio8RF0?...

Congrats @jni.fosstodon.org.ap.brid.gy @napari.org 🎉

It's hard to express how much gratitude I have to everyone involved in the journey, both mine and @napari.org's, that has led to this point. #EurekaPrizes A small attempt below: 👇

Welcome to blusky PhD student extraordinaire Laura Xénard @lxenard.bsky.social !
🐙🪲

Course at EMBL-EBI. Managing a bioinformatics core facility. 8 – 10 December 2025. Hinxton, UK. EMBL's European Bioinformatics Institute.

Just over two weeks left to apply for our bespoke 'Managing a core facility' workshop. It will run 8 – 10 December 2025 at @ebi.embl.org in Hinxton.

Apply by 17 August: www.ebi.ac.uk/training/eve...

#corefacility #bioinformatics #operationalmanagement #impactpathways #teamleader #STEMmanager

🧬🖥️🥼

Light-Sheet Image Analysis Workshop 2026 – lightsheetchile

🚨 Deadline extended!
You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social

1/3

Opening for a professorship in multimodal imaging in the context of our cluster of excellence #3DMM2O. Here is the full advertisement with all details: tinyurl.com/2ksy2b2s

Looking for an opportunity to work on cutting super-resolution microscopy and AI? There's still time to apply to the two positions!

Our project BioFAIR: Towards FAIR Practices in Bioimaging has been selected for funding through the swissuniversities Open Science II Programme (www.swissuniversities.ch/en/topics/op...)!

More OME-Zarr and open microscopy community events on the horizon yay!!! 🔥🔥🔥

happy to finally share what we've been cooking 🍳

Zarr is hiring again! Build scalable bioimaging solutions, collaborate globally, and join the Friedrich Miescher Institute for Biomedical Research as a Computational Scientist or Research Software Engineer
www.fmi.ch/education-ca...