@sebastianbeier.bsky.social
ELIXIR Co-lead of Plant sciences community | Forschungszentrum Jülich GmbH | Bioinformatician | Genomics & Data Science in Plants
The @denbi.bsky.social crew & friends from Germany at #BioHackEU25!
14.11.2025 08:19 — 👍 4 🔁 1 💬 1 📌 1
🎉Thank you all for joining #BioHackEU25! A special thanks to our online and overseas participants 🙌 staying up late hacking through different projects with us. 👏It has been a great week!! And we look forward to seeing you next year for #BioHackEU26 in Barcelona, Spain!🥳
07.11.2025 05:03 — 👍 14 🔁 7 💬 0 📌 0
✨ We're halfway through #BioHackEU25!
This afternoon, all projects will present their 🎯 goals and challenges they’ve encountered and seek expertise from participants.
Keyword of this year: #Data, #Research, #FAIR and #Metadata
Today, a global community of hackers gathers in Berlin 🇩🇪 for the start of #BioHackEU25. Since 2019, over 2200 participants have gathered together for an intense week of collaboration to advance 275 projects.
Read the news: https://loom.ly/6sE_kdI
Marie Bolger closes the session at the #SOLRUB2025 with a presentation about the application of Helixer to the annotation of the #Solanaceae genomes.
23.09.2025 08:51 — 👍 5 🔁 3 💬 0 📌 0Hello, Bluesky! We’re AgBioData, a consortium of agricultural databases, researchers, and curators working to make genomic, genetic, and breeding data FAIR.
Follow us for updates on:
🔬 Data standards
📊 Tools & best practices
🌾 Community news
📢 Sustainability
#AgBio #OpenScience #FAIRdata #AgBioData
@denbi.bsky.social is the next days at the #EPPS25 in Bonn. We teamed up with @wggc-de.bsky.social for a workshop and with #phenet for a booth. #plant #phenomics @sebastianbeier.bsky.social
17.09.2025 09:09 — 👍 4 🔁 3 💬 1 📌 0Is plant single cell/nuc. & spatial transcriptomics your passion? Do you want to understand plant adaptation using cutting edge molecular & bioinformatics tools? Then come and join us to work together with @ceplas.bsky.social & @wggc-de.bsky.social. #plantjobs
www.fz-juelich.de/de/karriere/...
Did you know that you can build pipelines in @galaxyproject.bsky.social?
Check out this talk by Björn Grüning, head of the Galaxy Team @uni-freiburg.de, and discover how #Galaxy how to get started with the platform and create pipelines right away!
🔗 youtu.be/OIzWTd93k5c?...
#usegalaxy #genomics
Yes, there's "accessible" in my group's title. Come at me, Trump!
Just kidding, don't come at me, except if you're looking for a job in biomedical AI. Hiring at all levels, up to 100% of E13.
If you're enthusiastic about science and open source, consider applying! Please help spread the word. :)
First keynote talk of @denbi.bsky.social Spring School: Sara and @sebastianbeier.bsky.social talked about #RDM and #FAIR basics
25.03.2025 08:31 — 👍 1 🔁 1 💬 0 📌 0#PlantSciJobs #PlantSciJob
Research Associate / PostDoc: Analysis of Brassicaceae (Camelina) multi-omics data aimed at enhancing plant stress adaptation
In @usadellab.bsky.social 's lab @fz-juelich.de
Deadline: 6 April 2025
www.deutsche-botanische-gesellschaft.de/en/job-openi...
Today the @denbi.bsky.social spring school started with an introduction to Bielefeld, Bielefeld University, CeBiTec and de.NBI / #ELIXIR_DE as well as an introduction to #Lipidomics.
24.03.2025 13:18 — 👍 1 🔁 1 💬 0 📌 0
📣 BioHackathon Europe 2025 Call for project proposals is now open!
Submit your #bioinformatics project 🧑💻 for #BioHackEU25 by 14 April: biohackathon-europe.org
🙌 We welcome proposals that focus on areas supporting the work of ELIXIR, such as #FAIRdata, #metadata standards, #ontologies and more.
Showing the Arc as main Dataplant container
Flash Talk about @nfdi4plants.bsky.social at the #Plant2030 status meeting. Organize and store your plant research data for free as part of the German #NFDI. Check it out www.nfdi4plants.org free as in beer and open source.
05.03.2025 14:42 — 👍 14 🔁 9 💬 0 📌 0Indeed, at least the ICE seems to be on time for now 🙏🏻
05.03.2025 05:52 — 👍 0 🔁 0 💬 1 📌 0
It is way to early... On my way to the annual meeting of plant sciences funded by the BMBF in Potsdam. Looking forward to some interesting science and meeting some dear colleagues
05.03.2025 05:04 — 👍 1 🔁 0 💬 1 📌 0🙋
01.03.2025 08:58 — 👍 3 🔁 0 💬 0 📌 0
We are pleased to invite you to the International Symposium on Integrative #Bioinformatics co-organised as Gatersleben Research Conference (September 10–12, 2025 @leibnizipk.bsky.social Germany). This symposium is supported by @denbi.bsky.social / ELIXIR-DE. Read more: www.denbi.de/de-nbi-event...
25.02.2025 11:20 — 👍 2 🔁 1 💬 0 📌 0
WOW 🤩 Roche just released a completely new way of sequencing DNA. A game changer?
www.roche.com/media/releas...
Come visit the @denbi.bsky.social booth at the #CLIB International Conference in Düsseldorf! Our team is excited to connect with you and share insights into #service, #training and #cloudcomputing. See you there!
19.02.2025 09:15 — 👍 1 🔁 1 💬 0 📌 0
Graphical abstract of BioChatter
Applying LLMs to biomedical research today can go one of two ways: we either use a closed-source web app, or we get coding ourselves. Many researchers lack training for the latter, so their only choice is the former. We want to change that. www.nature.com/articles/s41...
05.02.2025 09:15 — 👍 78 🔁 37 💬 2 📌 2Ich meine das mit dem Aufruf zum Wählen übrigens ernst. Laut Forsa könnten wir 28% (!) Nicht-Wähler_innen haben. Liebe Wissenschaftler_innen, liebe Wissenschaftsinstitutionen: Euch hören viele zu. Erinnert sie, wie wichtig Wählen ist. Für unsere Demokratie. & ermuntert sie, Botschaft weiterzutragen!
28.01.2025 08:34 — 👍 304 🔁 120 💬 14 📌 9
📜 One organ to infect them all: the Cuscuta haustorium
🧑🔬 Vasili A. Balios, Kirsten Krause, et al.
📔 @annbot.bsky.social
🔗 academic.oup.com/aob/advance-...
#️⃣ #PlantScience #PlantImmunity #PlantParasitism #ParasiticPlants #Cuscuta #Haustoria
Der Rest folgt - schriftlich gleich im Newsletter #ArbeitInDerWiss, dessen Abo sich ohnehin lohnt. arbeitinderwissenschaft.substack.com #IchBinHanna #HannaWählt2025
14.01.2025 07:35 — 👍 22 🔁 11 💬 0 📌 0
@lucasmunnes.bsky.social presenting genomes in the Morelloid clade and drought stress for one member i.e. S.nigrum which we collected just in front of our institute @hhu.bsky.social)
13.01.2025 00:45 — 👍 12 🔁 4 💬 0 📌 0
@angelakranz.bsky.social presenting DataPLAN as part of the @nfdi4plants.bsky.social data management consortium at #PAG32. It makes data management plan generation painless, works online and you immediately see what happens. Try it dmpg.nfdi4plants.org or read about it here doi.org/10.3390/data...
13.01.2025 01:38 — 👍 7 🔁 3 💬 1 📌 0
Bahn-Vorstand erhält fünf Millionen Euro Bonus für 2022
Gestern:
"Schlimm, dass die Lokführer streiken! Die sind einfach gierig! Die Bahn ist marode, woher soll das Geld denn kommen?!?".
Heute:
Die Union wollte wissen, wie viele Migranten und Geflüchtete hinter der Zunahme der Straftaten gegen queere Menschen stecken. Doch die meisten Taten wurden von Deutschen begangen - und von Rechten. Der Ausländeranteil ist sogar zurückgegangen. https://www.volksverpetzer.de/aktuelles/union-anfrage-s
16.10.2023 10:05 — 👍 1000 🔁 475 💬 31 📌 11
The title slide of a presentation called "GridScore NEXT - Accurate mobile plant phenotyping".
A slide showing plant phenotypic data collection in the larger picture in a chain from data collection to follow-on trials, data analysis and finally publications. Error can propagate their way through this chain and end up in publications.
A slide showing a visual representation of the requirements for a mobile phenotyping app and a preview of GridScore below running on multiple different devices.
The workflow of using GridScore starting with the trial setup which is then shared using QR codes. People can then use the app on their phone to collect data in the field and look at specialised data visualizations all while the app keeps the data synchronised across all devices. Finally, the data can be exported into various formats.
Looking forward to my online presentation as part of the Waterman Seminar Series @ IPK Gatersleben next week where I'll talk about our plant #phenotyping app #GridScore. Sneak peek at some of the slides below.
#RSE
