AI for research: the ultimate guide to choosing the right tool
                Curious about using artificial intelligence to boost your research? Here are the programs you shouldnβt miss.
            
        
    
    
            Very positive spin on #GenerativeAI tools from @nature.com:
www.nature.com/articles/d41...
New to me is @thesify.bsky.social - anyone had any experience using this?
I'm trying to understand the privacy policy re: how inputs (papers, grants) are protected & whether they are used for training AI?
               
            
            
                09.04.2025 16:13 β π 4    π 2    π¬ 2    π 1                      
            
         
            
        
            
        
            
        
            
            
            
            
            
    
    
    
    
            π
               
            
            
                28.11.2024 19:48 β π 0    π 0    π¬ 0    π 0                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            π What a comprehensive review! π
ICIs have come so far - so many combinatorial strategies. Rational/precision tx & biomarkers remain areas of unmet need. Will AI/ML π€ help? So much more to do. 
Hopefully our #MANIFEST project (manifest-io.org.uk) can also contribute to this in the coming years.
               
            
            
                26.11.2024 01:26 β π 10    π 3    π¬ 0    π 0                      
            
         
            
        
            
        
            
            
            
            
            
    
    
    
    
            π Thanks!
               
            
            
                21.11.2024 07:30 β π 1    π 0    π¬ 0    π 0                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            π
               
            
            
                18.11.2024 21:31 β π 0    π 0    π¬ 0    π 0                      
            
         
            
        
            
            
            
            
            
    
    
            
                            
                        
                Coordinated inheritance of extrachromosomal DNAs in cancer cells - Nature
                Cooperative species of extrachromosomal DNAs are coordinately inherited through mitotic co-segregation.
            
        
    
    
            Cancer cells often harbor oncogenes outside chromosomes on extrachromosomal DNA (ecDNA), which is unevenly inherited by dividing cells. We reported in Nature last week that collectives of ecDNAs are inherited together by dividing cancer cells. 1/
www.nature.com/articles/s41...
               
            
            
                18.11.2024 17:37 β π 82    π 20    π¬ 2    π 3                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            After months in the making, super excited about the official launch of MANIFEST (www.manifest-io.org.uk) π, led by the visionary Samra Turajlic.
Happy to be a co-investigator & delivering parts of the programme as #TeamManchester: UoM, CRUK MI, CRUK NBC & #TheChristie.
Let's get started! π
               
            
            
                15.11.2024 18:13 β π 8    π 2    π¬ 1    π 1                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            A couple of days left to apply! We have a PhD position available in the lab to improve our understanding of cfDNA and cfRNA shedding from cancer cells, and the potential impact on heterogeneity. #cfDNA #liquidbiopsy #cfRNA
               
            
            
                18.11.2024 09:37 β π 5    π 3    π¬ 0    π 0                      
            
         
            
        
            
        
            
            
            
            
            
    
    
    
    
            Thanks so much for putting this together!
               
            
            
                17.11.2024 20:23 β π 2    π 0    π¬ 0    π 0                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            Here's the #Cancer #Research #2 starter pack π€©
Researchers, oncologists, patient advocates & more -working across all aspects of cancer research and treatment π§ͺπ¬βοΈ
I also tried to give some exposure to #PhD #students & #postdocs - randomly picked from followers of me or my lab!
go.bsky.app/6EcjWNA
               
            
            
                17.11.2024 18:57 β π 138    π 55    π¬ 43    π 5                      
            
         
            
        
            
            
            
            
            
    
    
            
                            
                        
                Does the UKβs liver transplant matching algorithm systematically exclude younger patients?
                Seemingly minor technical decisions can have life-or-death effects
            
        
    
    
            Fascinating read and salient illustrationsof the limitations/dangers of implementing machine learning into clinical decision making. As clinicians we shouldn't be deterred from trying to look inside the 'black box' and understand potential unforeseen consequences. www.aisnakeoil.com/p/does-the-u...
               
            
            
                17.11.2024 17:30 β π 3    π 0    π¬ 1    π 0                      
            
         
            
        
            
            
            
            
                                                
                                                
    
    
    
    
            #ScienceSaturday How can we enhance CAR-T cell activity against solid cancers? 
β‘οΈ In a recent study, Zhao et al transduced CAR-T to express IL-10, resulting in enhanced T-cell proliferation, effector function, mitochondrial capacity and antitumor activity in a variety of solid tumor murine models.
               
            
            
                16.11.2024 16:36 β π 1    π 2    π¬ 1    π 0                      
            
         
            
        
            
            
            
            
            
    
    
    
    
            Well this is all rather pleasant and civilised isn't it...
               
            
            
                16.11.2024 17:38 β π 5    π 0    π¬ 0    π 0                      
            
         
    
         
        
            
        
                            
                    
                    
                                            Here on the condition people can be normal about Antoine Dupont
                                     
                            
                    
                    
                                            Promoting diversity in the #RStats community via meetups, mentorship and global collaboration! 200+ groups worldwide.
#RLadies
                                     
                            
                    
                    
                                            Rotating Curator for the @rladies.org communityπ
π https://guide.rladies.org/rocur/ 
This week's curator: TBA
                                     
                            
                    
                    
                                            Professor of Precision Oncology at Newcastle and Clinical Director NE England Genomic Medicine Service. Interests include drug development especially in thoracic malignancy; biomarkers including cfDNA and treatment of older patients with cancer
                                     
                            
                    
                    
                                            Medical Oncologist & Immunotherapist, Clinical Trialist, Cancer Drug Developer, Translational Researcher University of Sydney, Medical Director Melanoma Institute Australia, Joint Australian of Year 2024, Fulbright Alumnus, Fellow AAS & AAHMS
                                     
                            
                    
                    
                                            Academic medical oncologist. Interested in biology, prostate cancer and drug development. Husband/Dad/Sport. Views my own and no specific advice/DMs.
                                     
                            
                    
                    
                                            Cancer Immunologist at Cancer Research UK National Biomarker Centre
                                     
                            
                    
                    
                                            The leading open source orchestrator for containerized, data-intensive pipelines on any infrastructure at any scale. From @seqera.io
                                     
                            
                    
                    
                                            Just another LLM. Tweets do not necessarily reflect the views of people in my lab or even my own views last week. http://rajlab.seas.upenn.edu https://rajlaboratory.blogspot.com
                                     
                            
                    
                    
                                            Elihu Professor of Biostatistics @yalesph.bsky.social--Cancer, Infectious disease, Evolutionary biology, Fungi, sometimes running
                                     
                            
                    
                    
                                            Rapid evolutionary dynamics in viruses, cancer and bacteria. Assistant professor at UW Genome Sciences.   federlab.github.io
                                     
                            
                    
                    
                                            A.v.Humboldt professor at the University of Mainz. Evolutionary ecologist. Runs a research group that once prompted the description "in this [coffee] room there's almost always someone who is at least partially fun". (Which we then translated into Latin.)
                                     
                            
                    
                    
                                            Associate Dean for Undergraduate Education at Indiana University School of Informatics, Computing and Engineering β’ mathematical biologist β’ multicellular systems & cancer with PhysiCell β’ OpenSource β’ astrophotography
Web: http://MathCancer.org 
                                     
                            
                    
                    
                                            Professor in computational cancer biology at UCL interested in disease, mutations, and aging. Funded by CRUK, MRC and Royal Society.
Personal account for science, code, music, photography! βTired is the new awakeβ
                                     
                            
                    
                    
                                            Senior Lecturer (β‘ associate professor) in applied maths, investigating the evolution and ecology of cancer. Dad of two small kids. On sabbatical  @isemevol.bsky.socialβ¬ π«π· (otherwise @citystgeorges.bsky.social π¬π§)
robjohnnoble.github.io
                                     
                            
                    
                    
                                            Assistant Professor of Pathology @yalecancer.bsky.social β’Β @cancerresearchuk.org Clinician Scientist & Pathologist @cam.ac.uk β’Β www.aitkenlab.org β’Β #GenomicPathology β’ postsβ employer β’ 
π² https://www.rideclosertofree.org/participants/SarahAitken
                                     
                            
                    
                    
                                            We crawl by inches. 
Group Leader at Barts Cancer Institute in London. Working on somatic evolution, ecDNA, clonal haematopoiesis, gITH, clonal evolutionβ¦
https://www.bartscancer.london/staff/dr-benjamin-werner/
Contact: b.werner@qmul.ac.uk
                                     
                            
                    
                    
                                            Prof @ UCSB 
Chair of Integrative Anthropological Sciences (IAS)
                                     
                            
                    
                    
                                            Mathematical Oncologist at the Integrated Mathematical Oncology department (@mathonco.bsky.social) at the Moffitt Cancer Center (@moffittnews.bsky.social). 
Married to the lovely @parmvir.com. 
On mastodon with @david@fediscience.org
                                     
                            
                    
                    
                                            Investigating origins and vulnerabilities of cancer chromosomal instability at the Barts Cancer Institute, London UK. Www.Mcclellandlab.com