Here we rigorously quantify these challenges (for the first time), develop an assay to overcome this problem, and use this approach to shed new light on delivery phenomena that have previously been elusive and confusing.
More to come with final publication!
07.07.2025 13:35 β π 0 π 0 π¬ 0 π 0
However, studying EV-AAV delivery carries unique technical challenges due to co-delivery of AAV and the protein it encodes, termed βpseudotransductionβ. This effect can lead to βfalseβ delivery that obfuscates both scientific investigation and technology development.
07.07.2025 13:35 β π 0 π 0 π¬ 1 π 0
Four types of AAV particle: one is free, the other three are enveloped and are functionalized with affinity domains and fusogens
This can be useful, as enveloping shields the AAV core from antibodies and potentially enables us to use targeting technologies developed for enveloped particles to direct AAV delivery to tissues of interest.
07.07.2025 13:35 β π 0 π 0 π¬ 1 π 0
Two AAV particles: one is enveloped and one is free
This preprint describes a new method enabling us to study and improve AAV encapsulated by extracellular vesicles (EVs). When cells produce AAV particles, which normally lack an envelope, a certain fraction get naturally incorporated into EVs.
07.07.2025 13:35 β π 0 π 0 π¬ 1 π 0
Distinguishing Protein and Gene Delivery Enables Characterization and Bioengineering of Extracellular Vesicle-Adeno-Associated Virus Vectors
Adeno-associated virus (AAV) gene therapies have achieved clinical success, with multiple products reaching regulatory approval. Encapsulation of AAV vectors within engineered extracellular vesicles (EVs) is an emerging strategy which could help overcome challenges including pre-existing anti-capsid immunity and the need for controlling targeting and tropism. To guide the development of EV-AAV technologies, we developed an assay for quantifying and controlling for the contribution of pseudotransduction to evaluations of EV-AAV-mediated gene delivery. We developed an AAV vector that switches its transgene output from one reporter to another when acted upon by Cre recombinase expressed in a recipient cell. Using this platform, we investigated EV-AAV transduction as a function of various engineered EV surface modifications. For actively endocytic cells (HEK293FTs), modifications that enhance EV uptake and membrane fusion influence protein delivery but not gene delivery. Conversely, in less endocytic Jurkat T cells, modifications enhancing EV uptake improved both protein and gene delivery. These conclusions held across multiple AAV serotypes. Our results resolve apparent conflicts in prior reports and suggest that effects of enhancing uptake and membrane fusion of EV-AAV vectors are recipient cell type specific. The methods developed here unambiguously dissect EV-AAV transduction mechanisms and can guide future bioengineering of EV-AAV vectors. ### Competing Interest Statement J.N.L., D.M.S. and H.I.E. have financial interests in Syenex Inc., which could potentially benefit from the outcomes of this research. National Institute of General Medical Sciences, T32GM008449 National Science Foundation, DGE-1842165, ECCS-2025633, DMR-2308691 National Cancer Institute, CA060553
I'm excited to share this new story led by @jdboucher.bsky.social in which we solve a longstanding problem challenging the development of a promising class of gene delivery vehicle.
www.biorxiv.org/content/10.1...
07.07.2025 13:35 β π 1 π 0 π¬ 1 π 1
Deadline to apply was just extended to June 5th!
23.05.2025 17:20 β π 0 π 0 π¬ 0 π 0
The original deadline for comments of May 23 has been extended to June 7 in response to requests from the public for more time to weigh in, an OMB spokesperson told STAT.
4/n
23.05.2025 14:37 β π 11 π 9 π¬ 1 π 0
Innovate & collaborate at NCIβs SΒ³ Innovation Lab! This virtual event will explore how synthetic & systems biology can advance our understanding of cancer initiation. Apply by May 27: apply.knowinnovation.com/s3-cancer-in... #SynSysBio4SpatialCancerResearch π§ͺ
23.05.2025 13:32 β π 1 π 0 π¬ 1 π 0
Are you interested in synthetic and systems biology approaches to study #spatiotemporal processes in cancer? Join NCI for virtual workshops on May 13, 15, & 20 (next week!) from 12:00β4:30 PM ET:
registration: events.cancer.gov/nci/syntheti...
#SynSysBio4SpatialCancerResearch
09.05.2025 15:48 β π 10 π 7 π¬ 1 π 3
The NSCEB released its final report last week, laying out a bold action plan to shape the future of biotechnology in the US! We look forward to continuing our work with NSCEB and other partners to advance engineering biology and strengthen the bioeconomy! www.biotech.senate.gov/final-report/
14.04.2025 20:03 β π 1 π 2 π¬ 0 π 0
20.12.2024 22:17 β π 1 π 0 π¬ 1 π 0
π
17.12.2024 23:25 β π 0 π 0 π¬ 0 π 0
Flyer for a Benzon Symposium on Protein structure prediction and design in biology and pharmacology (Sept. 1β4, 2025). Speakers include: Gabriel Rocklin, Birte HΓΆcker, Amy Keating, Tanja Kortemme, Bruno Correia, Sarel Fleishman, Ashutosh Chilkoti, Minkyung Baek, Noelia Ferruz, James Fraser, Alan Moses, Susan Marqusee, Ben Lehner, Mohammed AlQuraishi, Dek Woolfson, Gustav Oberdorfer, Hannah Wayment-Steele, Ora Schueler-Furman, Jenifer Listgarten, Alexander Rives, & Max Bonomi.
π£ Save the dates π
We are organizing a Benzon Symposium on "Protein structure prediction and design" with what I think is an amazing set of speakers
Meeting will take place in Copenhagen π©π° on Sept. 1β4, 2025, and abstract submission will open in March (benzon-foundation.dk/benzon-sympo...)
13.12.2024 14:51 β π 92 π 30 π¬ 1 π 2
Could one envision a synthetic receptor technology that is fully programmable, able to detect diverse extracellular antigens β both soluble and cell-attached β and convert that recognition into a wide range of intracellular responses, from gene expression and real-time fluorescence to modulation..
04.12.2024 16:05 β π 433 π 139 π¬ 33 π 17
https://www.nature.com/articles/s41586-024-08366-0
Exciting to see this beautiful synthetic receptor engineering work out from @piraner #davidbaker (@UWproteindesign) and @KoleRoybal. Congrats all! t.co/t2UuumuTK5
16.11.2024 14:44 β π 1 π 0 π¬ 0 π 0
Congrats to lead author DevinStranford and our collaborators Julius Lucks & Judd Hultquist and teams @NUSynBio!
27.11.2023 17:24 β π 0 π 0 π¬ 0 π 0
New platform solves key problems in targeted drug delivery
Research potentially removes barriers for promising cell and gene therapies
We believe this technology can be extended to solve all manner of delivery challenges for gene and cell therapy. Check out the story behind the paper and our recent spin-out which is bringing GEMINI to the world through Syenex
Β
news.northwestern.edu/stories/2023...
27.11.2023 17:23 β π 0 π 0 π¬ 1 π 0
We demonstrate the utility of GEMINI by delivering Cas9-sgRNA CRISPR complexes to primary human T cells to knock out the gene for CXCR4, one of the receptors that HIV uses to infect cells
27.11.2023 17:23 β π 0 π 0 π¬ 1 π 0
Here we develop a suite of technologies for actively loading cargo into EVs, and we elucidate principles for displaying targeting and fusion domains on the surface of EVs to achieve targeted delivery
27.11.2023 17:22 β π 0 π 0 π¬ 1 π 0
More to come with final publication. Congrats to the whole team! 3/3
27.09.2023 20:23 β π 0 π 0 π¬ 0 π 0
Here we develop a method using flexible HaloTag labeling to absolutely quantify surface protein loading at the individual EV level, providing new insights into EV heterogeneity, and we use this to demonstrate that existing methods substantially underestimate surface display 2/3
27.09.2023 20:13 β π 1 π 0 π¬ 1 π 0
HaloTag display enables quantitative single-particle characterization and functionalization of engin...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
Every cell in the living world constantly sheds virus-size particles, and these βEVsβ are useful for biotechnology. Here we address a key unmet need in EV bioengineering research: counting surface features (accurately) 1/3 www.biorxiv.org/content/10.1...
27.09.2023 20:12 β π 1 π 0 π¬ 1 π 0
Here we develop a method using flexible HaloTag labeling to absolutely quantify surface protein loading at the individual EV level, providing new insights into EV heterogeneity, and we use this to demonstrate that existing methods substantially underestimate surface display
27.09.2023 20:00 β π 0 π 0 π¬ 0 π 0
I'm excited to join Bluesky and psyched about this venue for learning (and occasionally posting) about science, life, and more. On to our first [real] post....
27.09.2023 19:59 β π 2 π 0 π¬ 0 π 0
Synthetic biology, cell and gene therapy. Member of the Leonard Lab at Northwestern University. Public transit and techno enthusiast. Views are my own.
signaling systems and protein circuitry. reimagining what cells can be. fun posts only. Assistant Professor:
@uwbiochem | Postdoc: @stanford @prakashlab | Ph.D.:
@ucsf Wendell Lim @CDI_UCSF
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#DevBio Lab at NorthwesternU Studying Pluripotency, Neural Crest Stem Cells and the Evolution of Vertebrates. Recovering Former Dept. Chair, Diversity Advocate. President Society for Developmental Biology.
Husband, Father and grandfather, Datahound, Dog lover, Fan of Celtic music, Former NIGMS director, Former EiC of Science magazine, Stand Up for Science advisor, Pittsburgh, PA
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An inclusive community of researchers and professionals committed to advancing engineering biology to address national and global needs.
Announcing posts for our blog.
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Styczynski group at Georgia Tech. Synthetic biology for biosensors. Metabolomics. Computational Biology. Helping the world the best we know how. *student-run*
My lab works on genome evolution, using yeast genetics and genomics. Chair, Department of Genome Sciences at University of Washington.
Lab website: https://depts.washington.edu/dunhamlab/
Digests proteins. High-throughput protein biophysics and design, Northwestern University. www.rocklinlab.org