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Geoff Barton

@gjbarton.bsky.social

Prof. of Bioinformatics at Dundee, Scotland, UK and head of https://bartongroup.org the home of @jalview.bsky.social jalview.org JPred and more! See: https://bit.ly/3YXtgeq for the publications. Also writes music: https://youtube.com/@GeoffBartonMusic

924 Followers  |  428 Following  |  161 Posts  |  Joined: 11.02.2024  |  2.2269

Latest posts by gjbarton.bsky.social on Bluesky

Yes, core funded research institutes do this (EMBL, CRUK, MRC-LMB, MaxPlanck etc) but it is rare for universities to.

06.10.2025 14:36 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Which ones? I want a job there!! Not in the UK not even Oxbridge. The closest to this is a few core funded research institutes but even there everyone is subject to a 5-year review and outcome is linked to funding. Maybe Switzerland?

05.10.2025 07:23 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Forecast suggests it will be windy through the night. Much worse over on the West Coast of course! Stay safe!

03.10.2025 18:41 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

You may be right. I guess someone here might find official statistics on shootings in the uk and gun deaths. This might guide what β€˜mass’ means. As a layman I tend to think of large tragedies as mass. Clearly the USA β€˜wins’ but maybe the numbers in the post were for all shootings?

01.10.2025 20:24 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 2    πŸ“Œ 0

You mean the USA I assume? In the UK there are perhaps 1 or 2 incidents with 4 or more people shot/year. There have thankfully only been a couple of terrible mass shootings in my lifetime. Hungerford (1980s) and Dunblane(1990s) Dunblane led to a total ban on hand gun ownership in the UK.

30.09.2025 21:46 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

UK numbers look way off. Far too big.

30.09.2025 14:55 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 3    πŸ“Œ 0

I never used them but my PhD desk room in the basement at Birkbeck London had boxes of them on the high shelves. They mostly hand reflection data from X-ray crystallography experiments I think πŸ€”

09.09.2025 16:17 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
The new secondary structure annotation tree showcasing all protein secondary structure providers available for sequences in a sample ferredoxin alignment in Jalview 2.11.5.

The new secondary structure annotation tree showcasing all protein secondary structure providers available for sequences in a sample ferredoxin alignment in Jalview 2.11.5.

πŸš€ Jalview 2.11.5 is here!

New features include:
βœ… Tree visualisation for enhanced protein secondary structure analysis
βœ… Consensus colouring for alignments and subgroups
βœ… Improved command line options for 3D structure visualisation

Plus, key bug fixes and performance improvements.

05.09.2025 11:02 β€” πŸ‘ 12    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0

I timed it perfectly to be in the entirety of the storm for my 20 min walk…. Ho hum!

15.08.2025 08:53 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

The rain was lovely and warm!

14.08.2025 18:22 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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So much for the theory that I’d miss the storm if I left for home…

14.08.2025 15:44 β€” πŸ‘ 5    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0
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Well I got that wrong…

14.08.2025 15:43 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

My office is really hot so I might just go home and lounge by the pool... Oh, I don't have a pool! Drat!

14.08.2025 14:17 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 2    πŸ“Œ 0
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Another great day for weather at #sunny #dundee. Actually peaked at almost 27 degrees!

13.08.2025 16:10 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

Some of the best features introduced to Jalview over the last few years! πŸ˜€

07.08.2025 14:36 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Still breezy but nothing too bad at #Dundee #scotland #UK
Forecast suggests it should get a bit windier by 18:00 but perhaps not?

04.08.2025 12:52 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 3    πŸ“Œ 0

Very quiet at work today - many people staying home to avoid the forecast winds later today. Just beginning to pick up now but the peak is forecast for 16:00 today... Take care if you are out and about!

04.08.2025 10:00 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Great new features in Jalview that allow you to explore protein structures predicted by AlphaFold

01.08.2025 10:33 β€” πŸ‘ 5    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0

Do people really collect this junk???

27.07.2025 19:51 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I threw a pile of SGI stuff out a couple of years ago. I think I kept the green Indigo2 XZ though since it was the first SGI I’d bought thanks to a BBSRC grant around 1993?. All the peripherals went to recycling…

27.07.2025 19:50 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Actually, it was a COMPAQ one so @ewanbirney.bsky.social might appreciate that…

27.07.2025 19:41 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

They used to flash when bounced but the batteries are long dead!

27.07.2025 19:24 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Nice pen! I have some SGI bouncy balls from the late 1990s. Oh and Sun Microsystems ones with β€˜We are the dot in dot com’ on them!

27.07.2025 19:23 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Saying hi to the giant Beatles statue…. Random tourist photo bombed my selfie!!!

Liverpool #ismbeccb2025 starts tomorrow.

19.07.2025 18:11 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Sunshine by the Mersey at Liverpool… #ismbeccb2025

19.07.2025 17:14 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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And a different perspective!

19.07.2025 07:54 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

MusΓ©e D’Orsay πŸ‘πŸ‘

18.07.2025 21:10 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Thanks to @javierutges.bsky.social and David Koes πŸ‘

18.07.2025 15:56 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Getting warm in my office in #sunny #dundee #scotland #UK

β€˜Only’ 25C outside!

18.07.2025 15:29 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

...at any point in time the most people working full-time on Jalview has been four. We have also had summer students such as Google Summer of Code people contributing new ideas to the codebase.

18.07.2025 13:07 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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