Dominique Beaini

Very excited by this work! Simultaneously learn the DFT and sample the Boltzmann distribution by using two GPUs concurrently.

Amazing stuff!

🤯 We can now directly interact with biology via this new foundational knowledge graph. A must read 🧵

Everyone’s chasing AGI - but what’s the #DrugDiscovery equivalent?

Meet the Virtual Cell: our bold roadmap to curing any disease by simulating the building block of human biology

Check out @valenceai.bsky.social vision of curing diseases with GPU-based scientific discovery

Submit a 1-page abstract of your Neurips work to present it to the MoML conference on June 18th in Montreal

MoML conference is back on June 18th!

We're currently looking for a PostDoc position at @umontreal.ca and @mila-quebec.bsky.social to build a multimodal bacterial representation for anti-biotic with biologists from brunlab.com using:
- Phenomics
- Transcriptiomics
- Structural bio
- Viability
- ADME

DM me for more info

We’re absolutely thrilled to have an exciting lineup of speakers this year covering a wide range of topics, including @pseudomanifold.topology.rocks @dom-beaini.bsky.social @mathildepapillon.bsky.social Dhananjay Bhaskar, Naoki Saito!

First place: “How Molecules Impact Cells: Unlocking Contrastive PhenoMolecular Retrieval”

Predicting the effect of molecules on cells with MolPhenix

Paper: www.arxiv.org/abs/2409.08302
@dom-beaini.bsky.social

Thanks to the FM4Science workshop at #Neurips for recognizing MolPhenix as best paper!

We had so much fun working on this with Puria (co-first author), @karush17.bsky.social, Frederik and co-supervised by Maciej and @dom-beaini.bsky.social

arxiv.org/abs/2409.08302
@valenceai.bsky.social

Thanks! What are you up to these days?

bsky.app/profile/dom-...

Definitely a career highlight to be awarded a best paper award at @neuripsconf.bsky.social FM4Science 🤩🤩

But even more exciting is that the 2nd and 3rd awards are given to colleagues Kian and Mohit, a podium sweep from @valenceai.bsky.social / @recursionpharma.bsky.social 🥇🥈🥉

Thanks to co-authors @phil-fradkin.bsky.social, Puria, Frederik, Maciej, @karush17.bsky.social

Excited to be presenting MolPhenix today as an #oral presentation at the @neuripsconf.bsky.social workshop: Foundation Models for Science!

3 out the 6 oral presentations in that workshop are from @valenceai.bsky.social / @recursionpharma.bsky.social

Join us in West Meeting Room 202-204 at 12pm

We're hiringggggg

Interested? Come find me at @neuripsconf.bsky.social :)
valencelabs.com/careers

#machinelearning #AI #drugdiscovery

Special delivery from @neuripsconf.bsky.social! We just released our latest certified dataset, RxRx3-core, which includes labeled images of 735 genetic knockouts & 1,674 small-molecule perturbations. The related benchmark evaluates the zero-shot prediction of compound-gene activity. #NeurIPS
👇

Huge crowd at the Molphenix paper 🤩🤩 presented by @phil-fradkin.bsky.social and Puria

Great news from Recursion! Getting closer to industrialization of drug discovery

And of course @valence_ai and @Polaris_HQ

@phil-fradkin.bsky.social , @karush17.bsky.social , @majhas.bsky.social, @jyoonlee.bsky.social , @hannes-stark.bsky.social , Frederik Wenkel, Maciel Sypetkowski, Stephan Thaler, Nikhil Shenoy

Super excited to be flying to @neuripsconf.bsky.social to present 3 awesome papers! Including an oral presentation 📣!

Check out MolGPS, MolPhenix, and ET-Flow.

You can find us Wednesday and Friday at the posters, and Sunday for the oral!

Thanks to an amazing team of co-authors in the thread 🧵

My students @majhas.bsky.social and @jyoonlee.bsky.social are now on bluesky!

They're new in the field, but they're assuming BIG! You should follow them to not miss out on their work.

Already a @neuripsconf.bsky.social paper only a few months after they started.

You were already there of course! Can't have ML for drug discovery without a great benchmarking platform

ET-Flow shows, once again, that equivariance is better than Transformer when physical precision matters!

come see us at @neuripsconf.bsky.social !!

Check out this new competition from @polarishub.io

bsky.app/profile/pola...

Added

I'll be at #NeurIPS2024 next week presenting 4 papers all on generative models!

Happy to meet old friends and new ones at all the fun events!

Papers in thread 🧵

Done!

Just added!

New benchmarks like plinder and models like AlphaFold3 now introduced the pli-lddt metric, which has a dynamic threshold similar to auroc.
www.plinder.sh