🚀 Excited to share scPortrait! Led by Sophia Mädler & Niklas Schmacke w/ the Mann lab — a new @scverse tool for standardized single-cell image data. Enables ML-ready extraction, >1B cell processing, cross-omics, & cancer macrophage insights.
🔗 www.biorxiv.org/content/10.1...
28.09.2025 17:50 — 👍 55 🔁 25 💬 0 📌 1
So glad to see scportrait finally out on
@biorxivpreprint.bsky.social ❤️
Check out the tweetorial about our main findings 👇
It was a pleasure working with everyone who contributed to this project.
24.09.2025 13:08 — 👍 2 🔁 0 💬 0 📌 0
scPortrait integrates single-cell images into multimodal modeling
Machine learning increasingly uncovers rules of biology directly from data, enabled by large, standardized datasets. Microscopy images provide rich information on cellular architecture and are accessi...
Our preprint on scPortrait is out! We built a framework + format to turn microscopy into standardized single-cell image datasets. #scPortrait scales >100M cells, integrates with @scverse.bsky.social, & enables cross-modality modeling from morphology to transcriptomics
doi.org/10.1101/2025...
24.09.2025 11:01 — 👍 13 🔁 4 💬 1 📌 1
Foundational tools for omics data (mostly in python).
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The California Institute of Technology aims to expand human knowledge and benefit society through research integrated with education.
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