Reference genome choice compromises population genetic analyses
Using a species-specific reference genome significantly improves the accuracy of population
genetic analyses, as exemplified by mapping gray fox sequence data to genomes of several
canid species. Mapp...
Reference genome choice compromises population genetic analyses - a problem for microbes too! Our lab is designing a tool to automatically choose references for input samples using features like phylogeny of reads to existing references. Any thoughtsπ€©? π§ͺπ¦ π§¬π₯οΈ #microsky
www.cell.com/cell/abstrac...
06.12.2025 08:51 β π 25 π 7 π¬ 4 π 0
Very interesting, thank you very much !
10.12.2025 11:04 β π 1 π 0 π¬ 1 π 0
The New Invasion - @fgravey.bsky.social presenting the epidemiology of carbapenem-resistant bacteria in Normandy, France
27.06.2025 13:20 β π 2 π 1 π¬ 0 π 0
Really agree with this post, amazing podcast, learned so much, thank you very much @cmicomms.bsky.social
20.05.2025 10:24 β π 4 π 0 π¬ 1 π 0
Portrait of Otelia Cromwell, the first African American woman to receive a Ph.D. from Yale University, 1926, by contemporary US painter Jennifer Packer #WomensArt
17.05.2025 12:55 β π 6262 π 859 π¬ 0 π 31
Bravo @tarcilazarzosa.bsky.social
02.05.2025 10:01 β π 1 π 0 π¬ 0 π 0
Academically, I know there are massive problems with access to adequate antibiotics in LMICs, but looking at infection burden and sales of relevant antibiotics, this article estimates only 6.9% of CRGN infections are treated properly.
Truly shocking.
01.05.2025 06:44 β π 3 π 2 π¬ 1 π 1
I feel seen.
30.04.2025 13:44 β π 2 π 1 π¬ 1 π 0
Barry Blittβs cover for this weekβs issue, βThe First Hundred Days.β #NewYorkerCovers nyer.cm/ysrCZ47
28.04.2025 16:20 β π 27660 π 6663 π¬ 417 π 280
This morning with my team we talked about the @angelahuttner.bsky.social pilot program in @cmicomms.bsky.social journal in which some very relevant reviewers could be add in the acknowledgments or perhaps among authors ! At the unanimity, this is an amazing idea π
17.04.2025 07:43 β π 1 π 0 π¬ 1 π 0
Attendees can receive certificates for attending or presenting at #ESCMIDGlobal 2025. For more info, visit the congress webpage: ow.ly/sHfa50VzNO7
Please note, you can only claim credit points once, so be sure to claim them all at the end.
15.04.2025 12:53 β π 7 π 2 π¬ 0 π 0
Our May issue is now LIVE!π
www.nature.com/nrmicro/volu...
πΉAntibiotic-recalcitrant Salmonella during infection
πΈThe consequences of SARS-CoV-2 within-host persistence
πΉShigella sonnei: epidemiology, evolution, pathogenesis, resistance & host interactions
πΈHepatitis B and D virus entry
16.04.2025 15:52 β π 3 π 3 π¬ 0 π 0
Thank you very much for your help π
15.04.2025 21:40 β π 2 π 0 π¬ 0 π 0
Thank you very much for the link, but Iβm unable to reach the video ? Thanks
15.04.2025 21:33 β π 0 π 0 π¬ 1 π 0
Thank you very much to @drneilstone.bsky.social for your very inspiring talk this morning about the scientific presence on social medias at #escmidglobal2025. You have been heard, this is my first message on Bluesky. Letβs see how it goes π
15.04.2025 21:30 β π 31 π 5 π¬ 0 π 0
editor-in-chief Ursula Hofer speaks about predatory publishing at ESCMID Global in Vienna.
Great talk by Ursula Hofer @hoferu.bsky.social, editor-in-chief of @thelancetinfdis.bsky.social, on #predatorypublishing. So many horrible things to learn. π₯
#ESCMIDGlobal #IDSky
15.04.2025 07:21 β π 10 π 7 π¬ 0 π 0
Another great talk! @drneilstone.bsky.social discusses how social media can serve you & communicate your research! Some great slides breaking down an effective posting strategy! π
#ESCMIDGlobal #IDSky #clinmicro
15.04.2025 07:37 β π 23 π 6 π¬ 1 π 0
Senior Research Fellow at the University of Oxford using genomics to investigate the global spread and evolution of bacterial pathogens.
Science | Sport | Music
Professor in clinical microbiology. Researcher on antibiotic resistance. @hopitalbichat @APHP, University Paris Cite. @IAME_Center.
#AMR #OneHealth #plasmids
professor at Institut Pasteur. Bacterial genomics, vaccine-preventable diseases, antimicrobial resistance, bioinformatics and public heath applications. International capacity building and teaching. Klebsiella diphtheria whooping cough genomic librairies
Scientist⦠pathogen genomics & antimicrobial resistance, computational biology & infectious disease epidemiology.
Co-Director LSHTM AMR Centre @lshtmamrcentre.bsky.social
holtlab.net | klebnet.org | typhoidgenomics.org | amr.lshtm.ac.uk
Scientist, genomics, evolution, microbiology, computational biology, Institut Pasteur/CNRS, Paris
The AI research assistant http://elicit.com
β’ Demos https://demos.elicit.com
β’ Jobs http://elicit.com/careers
The Lancet Microbe is an #OpenAccess journal publishing innovative and practice-changing research and opinion in clinical #microbiology
π thelancet.com/journals/lanmic/home
A scientific journal publishing cutting-edge methods, tools, analyses, resources, reviews, news and commentary, supporting life sciences research. Posts by the editors.
The #LancetPublicHealth is an #OpenAccess journal publishing research and opinion contributing to advancing #publichealth and policy making.
π https://www.thelancet.com/journals/lanpub/home
Leading biomedical #openaccess journal, bridging the gap between basic and clinical research. Part of The Lancet Discovery Science. IF=9.7
π https://www.thelancet.com/journals/ebiom/home
#LancetGlobalHealth is an #OpenAccess journal publishing robustly designed research on all aspects of #globalhealth.
π thelancet.com/journals/langlo/home
πΌοΈ Simon Davis/DFID
Gold #openaccess clinical journal, part of The Lancet Discovery Science, influencing clinical practice and strengthening health. IF: 10Β·0; CiteScore: 17Β·0.
π https://www.thelancet.com/journals/eclinm/home
Explore groundbreaking news and research from PNAS, one of the world's most-cited scientific journals. Discover its sibling journal, @pnasnexus.org, both official journals of the National Academy of Sciences. Visit www.pnas.org for more info.
A global community of 13,000 clinicians, scientists and public health experts working together to solve humanityβs smallest and greatest challenges, from tiny microbes to global outbreaks.
The world's leading journal on infectious diseases. Clinical ID, public health, microbiology, and everything in-between. Official publication of @idsainfo.bsky.social
Nature Medicine is a research journal devoted to publishing the latest advances in translational and clinical research for scientists and physicians.
www.nature.com/nm
French ID society.
www.infectiologie.com