Felipe ten Caten's Avatar

Felipe ten Caten

@ftencaten.bsky.social

Research scientist @ PATRU - Emory University Bioinformatician diving into data to understand how our immune system fights infections πŸ‘¨β€πŸ’»πŸ§πŸ¦ πŸ§«πŸ§¬πŸ”¬πŸ“šπŸ‡§πŸ‡· https://med.emory.edu/departments/pathology/research/patru/index.html

235 Followers  |  1,181 Following  |  24 Posts  |  Joined: 12.04.2023  |  1.9103

Latest posts by ftencaten.bsky.social on Bluesky

Amusing how 99% of people using LLMs forget how these things work:

They are advanced probability machines. They generate the next most likely token (word) based in the input and their training.

Under the hood, it’s a giant matrix multiplication that has eerily good output.

04.09.2025 13:47 β€” πŸ‘ 575    πŸ” 68    πŸ’¬ 59    πŸ“Œ 16

bug ou feature?

13.06.2025 12:44 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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You might be wondering why we haven't updated outbreak.info for months.

Well, the reason is that GISAID cut our access in January - as they did others. Without telling us.

After a ♾️ back and forth, that is now permanent.

More on that soon - and why GISAID should not be trusted with critical data.

28.05.2025 23:02 β€” πŸ‘ 256    πŸ” 123    πŸ’¬ 3    πŸ“Œ 10
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The spread of Mpox in Sierra Leone is unlike anything we have ever seen - and we have been keeping an eye on this bug in the region for >15 years.

Given geographical spread, 50/50 men vs women, this is no "sexual network".

This could be the next one.

clt.npha.gov.sl/outbreak.aspx

22.05.2025 21:56 β€” πŸ‘ 431    πŸ” 209    πŸ’¬ 31    πŸ“Œ 19

> This is how they’ll tamp down on leaks.

tl;dr β€” Pierbattista Pizzaballa didn't add his brother and lawyer to the "New Pope, Biatches !!1!" signal chat

23.04.2025 06:09 β€” πŸ‘ 226    πŸ” 20    πŸ’¬ 12    πŸ“Œ 1

"this is more of a comment than a question"

10.04.2025 19:25 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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A Second Child Dies of Measles in Texas It is the second confirmed measles death in the U.S. in a decade. If the outbreak continues at the current pace, the nation may lose its β€œelimination” status.

Breaking News: A second child has died of measles in West Texas amid an escalating outbreak. It is the second confirmed measles death in a decade in the U.S.

06.04.2025 12:28 β€” πŸ‘ 1360    πŸ” 535    πŸ’¬ 165    πŸ“Œ 93

Anyone who works in ML/AI knows it is doomed to failure without knowing a thing about the domain. Design for useful predictions/behavior cannot happen in a vacuum, and the objective isn't a fixed point either. There's too much nonsense from deep thinkers about "replacing jobs"

27.03.2025 13:27 β€” πŸ‘ 16    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Had a great time at #CROI2025! As a first-time attendee, it was a fantastic opportunity to be exposed to different topics in HIV research. Got great feedback from our work at Ribeiro’s lab. Can’t wait for next year!

13.03.2025 08:17 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

com a ressalva de que um previne a doenΓ§a a ponto de erradicar, o outro trata e exige uso contΓ­nuo. apesar da importancia dos dois acho que o paralelo nao funciona mt bem

07.03.2025 12:55 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Francis Collins, the NIH Director for 12 years, led the Human Genome Project and other NIH efforts for 32 years, resigned today. Key words from his resignation letter
www.nytimes.com/2025/03/01/u...

01.03.2025 18:07 β€” πŸ‘ 3157    πŸ” 1397    πŸ’¬ 62    πŸ“Œ 95
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Combatting Chronic Disease An overview of the chronic disease research based out of the Rollins School of Public Health.

πŸ”¬ Research saves lives! πŸ§ͺ

Rollins researchers are dedicated to promoting human health and making people’s lives better. Chronic disease surveillance and prevention research has long been part of that work, and includes research in cancer, heart disease, diabetes, and more.

Learn more:

24.02.2025 15:54 β€” πŸ‘ 6    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Mark Zuckerberg’s charity confirms support for DEI despite Meta’s overhaul Exclusive: Chan Zuckerberg Initiative workers express concern, as recent changes there similar to those at Meta

I think this cancellation addresses very well some points in this article www.theguardian.com/us-news/2025... by @kalihays.bsky.social

19.02.2025 02:20 β€” πŸ‘ 13    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0

β€œSΓ³ mais um pocinho de petrΓ³leo e o Brasil vai virar uma potΓͺncia” Qual o motivo do Lula insistir tanto em fontes poluentes e nΓ£o renovΓ‘veis quanto o Brasil tem tantas outras opΓ§Γ΅es?

15.02.2025 00:52 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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One of our supporters shared this with usβ€”people are getting creative tonight!

14.02.2025 04:25 β€” πŸ‘ 84287    πŸ” 26122    πŸ’¬ 767    πŸ“Œ 907

In GEORGIA:

NIH AWARDS FUNDING: $780 M

JOBS SUPPORTED: 11,816

ECONOMIC ACTIVITY SUPPORTED: $2.18 B

08.02.2025 13:38 β€” πŸ‘ 28    πŸ” 11    πŸ’¬ 0    πŸ“Œ 1
NOT-OD-25-068: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Supplemental Guidance to the 2024 NIH Grants Policy Statement: Indirect Cost Rates NOT-OD-25-068. OD

1. Today the NIH director issued a new directive slashing overhead rates to 15%.

I want to provide some context on what that means and why it matters.

grants.nih.gov/grants/guide...

08.02.2025 00:18 β€” πŸ‘ 7070    πŸ” 4123    πŸ’¬ 260    πŸ“Œ 907

good news, finally submitted my grant to nsf on Technical biases in quantifying the inclusive fitness of minority alleles under diversifying selection in diverse microbial communities

04.02.2025 04:05 β€” πŸ‘ 377    πŸ” 42    πŸ’¬ 17    πŸ“Œ 8

The entire archive of CDC datasets can be found here.

HUGE shoutout to data archivists- this work is important πŸ‘πŸ™ŒπŸ»

archive.org/details/2025...

01.02.2025 18:33 β€” πŸ‘ 11875    πŸ” 4699    πŸ’¬ 226    πŸ“Œ 224
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EXCLUSIVE: NSF starts vetting all grants to comply with Trump’s orders Grantee accounts remain frozen, while union accuses NSF of ignoring rules governing peer review

This is not business as usual.

It’s not just a change in funding priorities going forward; it is the reneging on funding agreements and is profoundly disruptive for even those grants that will be found to be compliant.

Meanwhile, trainees who often live paycheck to paycheck are going unpaid.

31.01.2025 12:35 β€” πŸ‘ 1023    πŸ” 428    πŸ’¬ 15    πŸ“Œ 38
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In case you missed it: 2024 was the world's warmest year since @noaa.gov records began in 1850.

Global surface temperature was 2.32Β°F (1.29Β°C) above the 20th-century average. The 10 warmest years since 1850 have all occurred in the past decade.

21.01.2025 18:04 β€” πŸ‘ 769    πŸ” 339    πŸ’¬ 22    πŸ“Œ 41

DONATE TO WIKIPEDIA

Wikipedia needs donations.

A site that many uses to seek information. A site that is still free and not owned by the far-right - such as the Apartheid kid Nazi-Musk.

21.01.2025 19:57 β€” πŸ‘ 102    πŸ” 55    πŸ’¬ 7    πŸ“Œ 3
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Institut Pasteur decides to leave X The Institut Pasteur, a research organization which for more than 130 years has been committed to tackling infectious diseases, sharing knowledge and defending science, has decided to leave X because ...

The Institut Pasteur has decided to leave X (formerly Twitter) to join BlueSky! πŸ¦‹
The Institut Pasteur made this decision due to several serious issues observed on the X platform since its acquisition. Join us here to continue advocating for science. www.pasteur.fr/en/home/pres...

16.01.2025 09:18 β€” πŸ‘ 1462    πŸ” 363    πŸ’¬ 41    πŸ“Œ 41

One of the most important initiatives on the internet since its conception. Happy birthday Wikipedia!

15.01.2025 13:06 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
A chart in three parts showing data on child mortality to make the points that "The world is awful. The world is much better. The world can be much better. All three statements are true at the same time."

A chart in three parts showing data on child mortality to make the points that "The world is awful. The world is much better. The world can be much better. All three statements are true at the same time."

The world is awful. The world is much better. The world can be much better.

All three statements are true at the same time. Understanding this is key to solving big global problems.

We believe data & research can help us understand both the problems we face & the progress that’s possible. 🧡

10.12.2024 13:05 β€” πŸ‘ 1232    πŸ” 415    πŸ’¬ 13    πŸ“Œ 40
Sankey chart showing that most people who leave their home country stay on the same continent, rather than moving to a new one.

Sankey chart showing that most people who leave their home country stay on the same continent, rather than moving to a new one.

For most people, international migration means crossing a nearby border, not an ocean

20.12.2024 11:55 β€” πŸ‘ 156    πŸ” 48    πŸ’¬ 6    πŸ“Œ 3
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Wuhan lab samples hold no close relatives to virus behind COVID Shi Zhengli, the virologist at centre of COVID lab-leak theory, reveals coronavirus sequences from Wuhan institute.

"Wuhan lab samples hold no close relatives to virus behind COVID"

That should settle it, right? The problem, of course, it won't because we're dealing with conspiracy theories and not scientific inquiry - no amount of additional data will change un-evidenced beliefs.

www.nature.com/articles/d41...

06.12.2024 17:42 β€” πŸ‘ 727    πŸ” 257    πŸ’¬ 40    πŸ“Œ 29

🚨 Experts are being deployed to Panzi, in the southwest of the Democratic Republic of the #Congo, to support health authorities in investigating a yet undiagnosed disease. Laboratory tests are underway to identify the cause.

06.12.2024 16:06 β€” πŸ‘ 5523    πŸ” 1161    πŸ’¬ 230    πŸ“Œ 194

Fala Guga, jΓ‘ migrou de vez pra cΓ‘? O Twitter virou o antigo Facebook, sΓ³ tio e tia com umas conversas nada a ver por lΓ‘. E robΓ΄s.

27.11.2024 01:22 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

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