Leonie Lorenz

Do you like theoretical biology, mathematical&conceptual modelling and want to apply yourself to cutting-edge research at all levels of biology, from molecules to ecosystems?

Come to EMBL! Scope includes physics-based models, emergence, statistics, ML/AI
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

Thank you to everyone who joined us this week for the @embo.org Practical Course 'Methods for infectious disease modelling using genomics'.

Join us for 2026's EMBO Practical Course. Sign up for 'Causality in biomedicine' alerts and hear as this new course develops: www.ebi.ac.uk/training/eve...
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Open PhD position in our lab for starting roughly in September 2026. Cannot recommend this lab enough!!! 🦠🖥️

#MathematicalModelling
#BacterialGenomics
#Bioinformatics

Mathematical models in biology are powerful, but often hard to run, visualise, or reuse without specialist skills.

Menelmacar is a new platform that makes biological models interactive and easy to explore directly in the browser: biomodels.bacpop.org
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And if you want to dive deeper, we also developed the R package SBMLtoOdin that translates ordinary differential equation models from @biomodels.bsky.social into executable odin code, which should make these models easier to reuse. (More details in the paper of course!)

You can find our web-application Menelmacar ("Making Execution of (Nearly) Every Life-science Model ACcessible to All Researchers"!!!) here: biomodels.bacpop.org
Just try it out, I promise it's fun! 🤓

SBMLtoOdin and menelmacar: Interactive visualisation of systems biology models for expert and non-expert audiences AbstractSummary. Computational models in biology can increase our understanding of biological systems, be used to answer research questions, and make predi

Very happy to announce that my first first-author paper just got published in Bioinformatics! We developed the web-application Menelmacar that displays differential equation models from @biomodels.bsky.social in the browser - it's beautiful and interactive!
doi.org/10.1093/bioi...

We're so proud of this new on-demand tutorial from Eva-Maria Geissen, @leonielorenz.bsky.social, our recent intern Harry Roussos, third year PhD student at @pdncambridge.bsky.social.

Read Harry's blog all about the tutorial creation: www.embl.org/about/info/c...

Image credit: Juanita Riveros
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Mathematical modelling for biologists - Modelling concepts in biological research Mathematical modelling for biologists - Modelling concepts in biological research

My PhD student @leonielorenz.bsky.social (with Eva Geissen) has made this nice (free) online course to introduce mathematical modelling for biology:
www.ebi.ac.uk/training/onl...

Including both molecular and epidemiological examples

Powerful stuff from @juliosaezrod.bsky.social who found himself on the other end of the process - as a patient not a computational biology researcher - giving him insight into both research and patient perspectives. Huge credit to Julio for talking about his experiences here

Amira: gene-space de Bruijn graphs to improve the detection of AMR genes from bacterial long reads https://www.biorxiv.org/content/10.1101/2025.05.16.654303v1

EMBO Practical Course Methods for infectious disease modelling using genomics 14 - 19 September 2025 Hinxton, United Kingdom

You have until 25 May to apply for this @embo.org Practical Course introducing concepts, methods and tools for carrying out infectious disease modelling using genomics www.ebi.ac.uk/training/eve...

There is some financial assistance provided by EMBO - please see the course website for info

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SBMLtoOdin and Menelmacar: Interactive visualisation of systems biology models for expert and non-expert audiences Motivation: Computational models in biology can increase our understanding of biological systems, be used to answer research questions, and make predictions. Accessibility and reusability of computati...

Very happy and proud to announce that the first preprint of my PhD is out: arxiv.org/abs/2504.20710

We developed an R package to translate mathematical models in SBML format into executable odin models and visualise models from @biomodels.bsky.social on our website Menelmacar biomodels.bacpop.org

YouTube video by Max Delbrück Center Celebrating our #WomenInSTEM: Jana Wolf

"If you find something that you love, just follow it. Keep your eyes open, connect to others, and trust yourself," says Jana Wolf, head of the "Mathematical Modelling of Cellular Processes" lab at #mdcBerlin.

👇 Watch the video & share to inspire others! 👇 #mdcDiversity #WomenInSTEM #WomenInScience

Very excited to be co-organising the new EMBL-EBI and EMBO practical course "Methods for Infectious disease modelling using genomics".
Have a look at the programme and register your interest now if you like!

Josie Bryant and I have a 3yr joint postdoc project at Sanger & EBI (ESPOD)

Topic: Developing new bioinformatic and modelling approaches for exciting new longitudinal microbiome datasets

Project details: www.embl.org/editorhub/wp...
To apply: www.ebi.ac.uk/research/pos...

Excited to be at my first annual conference of the microbiology society #microbio24! Come by my poster (B082) on Wednesday if you want to talk about mathematical modelling and/or the population genetics of Streptococcus pneumoniae.