Cynthia SC

🔬 Diving into ATAC-seq workflows?
You've likely heard about Seurat, Signac, MACS2, Cicero, and chromVAR—core components in many workflows.
Here’s a quick overview I put together that showcases different approaches used across recent studies.
youtu.be/R5P8mGMXuIg?...
#SingleCell #Epigenomics #LIBD

02.06.2025 00:52 — 👍 6    🔁 3    💬 0    📌 0

Poster-Session-Epigenomics-Sciences-Cluster

¡Hola! 👋 Avances en nuestra investigación sobre la habenula humana, clave en motivación y estrés.
Usamos single-cell, epigenomics y spatial data para estudiarla.
Presentado en el 2025 Epigenomics Sciences Symposium (JHU). 🧠✨
#SingleCell #Epigenomics #LIBD

05.05.2025 03:30 — 👍 4    🔁 3    💬 0    📌 0

spatialDLPFC

👉 Sharing a talk of the molecular neuroanatomical map of the human prefrontal cortex. This study integrates Visium Spatial data with snRNA-seq to map cell types and interactions across spatial domains. Le
Watch here: youtu.be/EhP5-mhw29w
Slides on video
Explore: research.libd.org/spatialDLPFC/

05.03.2025 14:50 — 👍 2    🔁 2    💬 0    📌 0

Clustering methods in multiome scRNA-seq and scATAC-seq Main topics covered on this talk: Introducing the Weighted-Nearest Neighbor (WNN) for multimodal analysis A glance of WNN clustering algorithms availa…

🚀 Interested in multimodal analysis with WNN in Seurat?
Check out my recent RStatClub presentation, where we dive into Jaccard, canonical gene expression, and Silhouette for clustering evaluation!
📺 Watch here: speakerdeck.com/cyntsc/clust...
📑 Slides: www.youtube.com/watch?v=mE77...
#RStats

13.02.2025 17:40 — 👍 8    🔁 6    💬 0    📌 0

🚀 Sharing insights on ArchR, a powerful tool for single-cell chromatin accessibility analysis! 🎯 ArchR excels in large datasets and integrates scATACseq with scRNAseq for cutting-edge multi-modal studies.
🎥 Dive deeper with the video: youtu.be/XNZx5Dlp6jY?...

#Bioinformatics #10xGenomics #LIBD

12.12.2024 15:01 — 👍 11    🔁 5    💬 0    📌 0

#LIBD #SingleCellAnalysis #RNASeq #Bioinformatics #SpatialData

16.11.2024 19:16 — 👍 0    🔁 0    💬 0    📌 0

📊 Extraído de la presentación de @mbarse.bsky.social en nuestro Journal Club, abajo se resumen métricas compartidas y diferentes de Space Ranger para datos Visium 10x standard y Visium 10x Cytassist. Interesados en el análisis espacial y plataformas Visium?
🔗 Más: speakerdeck.com/manishabarse...

16.11.2024 19:15 — 👍 2    🔁 0    💬 1    📌 0

GLM-PCA overview Presented by Cynthia Cardinault Feature selection by approximate multinomial deviance .

📑 Más información: speakerdeck.com/cyntsc/glm-p...

16.11.2024 18:56 — 👍 0    🔁 0    💬 0    📌 0

✨ Comparto desde nuestro `Journal Club` esta presentacion donde exploro `Feature selection and dimension reduction for single-cell RNAseq`. Si te interesa cómo aplicar modelos multinomiales en scRNAseq, ¡dale un vistazo! 🎥
🔗 Video: [GLM-PCA en acción](www.youtube.com/watch?v=8cyf...)
#LIBD #RNASeq

16.11.2024 18:55 — 👍 5    🔁 1    💬 1    📌 0

Hi ! I am new here and I like to present my interests with this video from our Journal Club! This is an overview of the multiome analysis for scATACseq and scRNAseq using several
#CellRanger pipelines. This is inspired by our work at #LIBD and resources from 10x Genomics. youtu.be/fHVLi9-sftM?...

08.11.2024 20:29 — 👍 6    🔁 1    💬 0    📌 0