Regulatory Rewiring Drives Intraspecies Competition in Bacillus subtilis
bioRxiv from @bacteriacities.bsky.social
#competition #rapP #comP
www.biorxiv.org/content/10.1...
@tiffzarrella.bsky.social
assistant professor at georgetown | polymicrobial interactions | bacterial physiology | science educator | views my own www.zarrellalab.org
Regulatory Rewiring Drives Intraspecies Competition in Bacillus subtilis
bioRxiv from @bacteriacities.bsky.social
#competition #rapP #comP
www.biorxiv.org/content/10.1...
Top: (Top row) Sensitivity of S. coelicolor mutants to GlcNAc. Spores (5βΓβ105 CFU) of S. coelicolor M145 and its mutant derivatives βnagB, SMA11, βnagBβnagS, βnagBβnagSC (βnagBβnagS expressing nagS) and βnagBβnagSE (βnagBβnagS with empty plasmid pSET152) were streaked on MM agar plates with 1% mannitol (Mann) and 1% mannitol plus 10βmM GlcNAc (GlcNAc). (Bottom row) NagS and its role in GlcNAc sensing. Spores of M145 and βnagS were plated on MM and R5 with 0, 0.001, 0.01, 0.1, 1, 5, 10, 20, 50, 100, 150, and 200βmM GlcNAc. Note that nagS mutants hardly respond to GlcNAc. Bottom: Model for the metabolic control of development by GlcNAc and NagS. During late vegetative growth of streptomycetes, the old vegetative or substrate hyphae are degraded in a process of programmed cell death (PCD), to produce the nutrients required to build the aerial mycelium (see mycelial drawings on the right). Mycelial lysis results in breakdown of the cell-wall, leading to the accumulation of GlcNAc-6P, which is a major nutritional signal for the onset of development and antibiotic production. NagS converts GlcNAc-6P into 6P-chromogen I (denoted as X-Ac-6P), which in turn is deacetylated by NagA into a toxic metabolite (denoted as X-6P) that resembles ribose. The toxic metabolite promotes cell lysis, thus releasing more GlcNAc-6P that serves as substrate for NagS and NagA. A salvage pathway then switches off the toxic pathway again. For this, GlcNAc-6P is converted by NagA and NagB into Fructose-6P (Fru-6P), which enters the pentose phosphate pathway (PPP), thereby producing 6-phosphogluconate (6-PG), a metabolic inhibitor of NagS. Thus, production of toxic metabolites ceases and the transition to aerial growth can be initiated. Arrows with round ends represent inhibition, dashed arrow shows proposed activity.
GlcNAc build-up acts as a key metabolic signal in #Streptomyces, but how does it triggers developmental responses? @gillesvanwezel.bsky.social &co show that the enzyme NagS dehydrates GlcNAc-6P into a reactive intermediate, triggering a toxicity-based checkpoint @plosbiology.org π§ͺ plos.io/44pE08I
28.11.2025 14:00 β π 9 π 7 π¬ 1 π 0#microsky #phagesky
Transposon mutagenesis of jumbo #phage using an anti-CRISPR factor as selectable marker
www.biorxiv.org/content/10.1...
This week is World #AntimicrobialResistance Awareness week
To mark the occasion, Dr Scott-Dearing reflects on her @natcomms.nature.com paper published in January, noting the setbacks and progress made in tackling #AMR since
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/
www.science.org/doi/10.1126/...
Experimental phage evolution results in expanded host ranges against antibiotic resistant Klebsiella pneumoniae isolates
-in @natcomms.nature.com
www.nature.com/articles/s41...
Two unrelated Pseudomonas aeruginosa phages require the exopolysaccharide Psl for infection
NPJ Biofilms and Microbiomes from Courtney Reichhardt and @micheleleroux.bsky.social and colleagues
www.nature.com/articles/s41...
Did you know that some fungi are CARNIVOROUS? There are lots of species that do this, but I think Arthrobotrys oligospora is especially bonkers. These fungi sense when their prey (nematodes) are nearby by eavesdropping on the chemical signals that the nematodes use to communicate with each other π§ͺπͺ²π
19.11.2025 01:59 β π 54 π 15 π¬ 2 π 2Calling all rising juniors & seniors: Interested in biological or biomedical research? Applications for our β26 Summer Undergraduate Research Experience Program are now open! Nine weeks, hands-on research, & mentorship from some of the nationβs top scientists β learn more: bit.ly/CechFellows
18.11.2025 14:44 β π 64 π 79 π¬ 0 π 11#NewResearch
A bile acid-bound structure of toxin TcdB revealed the mechanism of inhibition and guided the design of a synthetic bile acid that alleviated C. difficile infection in mice.
#MicroSky π¦ π
www.nature.com/articles/s41...
Join the Micro PI Slack if you haven't already! Microbiologists unite π¬
13.11.2025 20:39 β π 3 π 2 π¬ 0 π 0Genome synthesis, assembly, and rebooting of therapeutically useful high G+C% mycobacteriophages.
DOI: 10.1073/pnas.2523871122
https://pubmed.ncbi.nlm.nih.gov/41213020/
A Two-Component Regulatory System Mediates Quorum Sensing-Dependent Morphology and Motility Transitions in the Archaeon Haloferax volcanii https://www.biorxiv.org/content/10.1101/2025.11.10.687552v1
11.11.2025 04:16 β π 2 π 1 π¬ 0 π 0Pictures of a pink sea anemone sitting on top of a hermit crab shell.
Oh, I love this. A new species of sea anemone was discovered recently that parks itself on top of a hermit crab shell like a hat. It seems to feed partly off the crab's faeces, but it also excretes a hard shell that extends the crab's home. In return, it's carried around the seafloor like a king.
10.11.2025 21:57 β π 5443 π 991 π¬ 133 π 101#ISMEJournal paper from Simon Heilbronner
Competitive fitness of Staphylococcus aureus against nasal commensals depends on biotin biosynthesis and acquisition
academic.oup.com/ismej/advanc...
M. smegmatis uses new types of biofilm to enclose a liquid core and expand outwards in a weird new way.
30.10.2025 20:30 β π 20 π 8 π¬ 1 π 2note, gliding is not comparable to sliding
the here described spreading is very similar to sliding (=spreading by growth and facilitating compounds, like polysaccharides), which was known for Salmonella - the authors are not fully correct stating that sliding always depends on surfactant
bacteria move by swimming, twitching, gliding/sliding, ...and now by 'swashing'
go figure!
#MicroSky
One transcript, two functions: the emerging roles of dual-function RNAs
microLIFE review by @lizmarialuke.bsky.social and Kai Papenfort at @uni-jena.de
academic.oup.com/microlife/ad...
Job ad for Quantitative Microbe-Plant-Environment interactions position
Job ad for microbial drivers of chronic disease position
Come join us in Knoxville!
The Dept. of Microbiology π§«π¦ at the University of Tennessee is hiring 2 Assistant Professors (tenure track, 9-month appt.).
Microbial Drivers of Chronic Disease: apply.interfolio.com/173153Quantitative Microbe-Plant-Environment Interactions: apply.interfolio.com/173345
www.pnas.org/doi/10.1073/...
#microsky
academic.oup.com/nar/advance-...
#microsky a database of bacterial small RNA experimental data
Wow. Harvard nuking its PhD programs
- Science PhD admissions reduced by more than 75%
- Arts & Humanities reduced by about 60%
- Social Sciences by 50β70%
- History by 60%
- Biology by 75%
- The German department will lose all PhD seats
- Sociology from six PhD students to zero
De-DUFing the DUFs π§© @franznarberhaus.bsky.social lab uncovers how small DUF1127 proteins regulate #phosphate uptake by binding the sensor kinase PhoR. Their conserved role from Agrobacterium to E. coli highlights how even small DUFs can shape bacterial physiology π¦
buff.ly/jJd9Eho
A choline-sensing regulator coordinates metabolic adaptation and pathogenesis in Pseudomonas aeruginosa pulmonary infections
-n Science Advances
www.science.org/doi/10.1126/...
Why Do Filamentous Actinomycetota Produce Such a Vast Array of Specialized Metabolites?
www.annualreviews.org/content/jour...
Exciting news! π In Jan 2026, Iβll be starting as an Assistant Professor at Mass General Hospital in Boston. The lab will study hostβpathogen co-adaptation during chronic lung infections, and how it shapes treatment outcomes and disease progression.
π Check out open positions: meirelleslab.org
π§ͺAn important read by @ianlmorgan.bsky.social about the plight of research. Reduction of force includes essential purchasing & communication staff. Cancelation of 35% in contract spending = hiring freezes & job insecurity.
Jay Bhattacharya is not interested in a solution.
This affects all of us.
new preprint from our group & Antoine Hocher: www.biorxiv.org/content/10.1...
A fantastic collaboration with Antoine, with Jovana Kaljevic' initiated the collaboration and drives the project.
They have fired the staff of the CDCβs Morbidity and Mortality Weekly Report and 70 Epidemic Intelligence Service officers, who are disease detectives that respond to outbreaks around the world.
I cannot emphasize enough how dangerous it is to dismantle our disease surveillance infrastructure.