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Mae Woods

@maewoods.bsky.social

Passionate about compbio | high performance computing | mathematics | digitalization | cell & gene therapy. Opinions are my own. GitHub: https://github.com/MaeWoods

1,143 Followers  |  1,013 Following  |  483 Posts  |  Joined: 10.09.2023  |  3.1164

Latest posts by maewoods.bsky.social on Bluesky

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The genomic basis of symbiotic integration at University of Bath on FindAPhD.com PhD Project - The genomic basis of symbiotic integration at University of Bath, listed on FindAPhD.com

There's a PhD position now available with me in Bath, on the evolution of symbiosis. www.findaphd.com/phds/project.... The supervisory team also includes @anja1.bsky.social @phil-donoghue.bsky.social and others. NB, this is open both to UK-based students *and* to international students :)

09.10.2025 09:39 โ€” ๐Ÿ‘ 23    ๐Ÿ” 30    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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#compchem #compbio Happy to be part of this new paper just published in @commsbio.nature.com : "Targeting RNA with Small Molecules using State-of-the-Art Methods Provides Highly Predictive Affinities of Riboswitch Inhibitors."
www.nature.com/articles/s42...
@qubit-pharma.bsky.social

01.10.2025 13:15 โ€” ๐Ÿ‘ 16    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

Long overdue, thank you

04.10.2025 09:03 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Workshop: Novelty, Co-option and Divergence During Gene Network Evolution. Organisers: James Hombrรญa and Antรณnia Monteiro. 14-17 June 2026, Buxted Park, East Sussex, UK. Early-career researchers apply for funded places.

Workshop: Novelty, Co-option and Divergence During Gene Network Evolution. Organisers: James Hombrรญa and Antรณnia Monteiro. 14-17 June 2026, Buxted Park, East Sussex, UK. Early-career researchers apply for funded places.

Calling early-career developmental biologists!

Apply for a funded place at our #Workshop, Novelty, Co-option and Divergence During Gene Network Evolution.

Application deadline: 5 December

www.biologists.com/workshops/ju...

#DevBio #BiologistsWorkshops #Collaboration #Networking

28.09.2025 13:19 โ€” ๐Ÿ‘ 16    ๐Ÿ” 16    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2

Yes! Thatโ€™s a good point & thanks for the links. Long read technology is driving a new wave of discovery for genetic mutations. Any software like this requires an incredible amount of energy, innovation and precision in the backend

27.09.2025 11:49 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

If your criteria is coding output, there are loads in the comp bio space. the folks who wrote scvi, pseudotime, kallisto, alevin fry, loompyโ€ฆ, alpha fold..

27.09.2025 10:59 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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FAIRNESS & PROGRESS Exploring the relationship between fairness and progress, emphasizing non-zero-sum games as a means to enhance human well-being and collective growth.

Why am I doing this? Simon Sinek says that all good stories start with "Why" so... I had a go at starting with "Why", and it changed the way I think about #fairness and #progress.

#PersonalDevelopment #SelfHelp #Values #Ethics #WellBeing #Humanity #Collective #Individual #nonzero

27.09.2025 08:17 โ€” ๐Ÿ‘ 52    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3
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Science Seminar on Oct 2nd, 1pm with Prof. Michael Heneka (University of Luxembourg): Innate Immunity entitled Innate Immunity in Alzheimerโ€™s disease. Please register at eventbrite.co.uk/e/cardiff-un... @uni.lu

27.09.2025 07:21 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Virtualization and the Cost of Indirection | Richard M. Karp Distinguished Lecture Some types of virtualization, such as virtual memory, are implemented by providing a layer of indirection between what the program sees and what the system implements. This layer of indirection is typ...

Join us next Tuesday!

simons.berkeley.edu/events/virtu...

26.09.2025 21:29 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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The Effects of a Place-Based Intervention on Resident Reporting of Crime and Service Needs: A Frontier Matching Approach Prior research has found that reporting of crime incidents and service needs remain low in many U.S. cities. This study employs a matching strategy using observational data from a large public repo...

A new paper I worked on is out in Justice Quarterly! I won't speak on the substantive nature of the paper as I worked solely as the methodologist, but I developed a new matching method not otherwise described in the literature, and I want to tell you about it!

#statssky #casualsky

18.09.2025 15:23 โ€” ๐Ÿ‘ 26    ๐Ÿ” 5    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1
Poster titled โ€˜Enhancing Small Molecule Binding through Computational Analysis of Water Networksโ€™

Poster titled โ€˜Enhancing Small Molecule Binding through Computational Analysis of Water Networksโ€™

Pleasure to present the final project of my PhD research at #ConformationalDesign25!
Thank you to AstraZeneca for hosting and the organising committee for a day of engaging talks ๐Ÿ‘

#CompChem #ChemSky

21.03.2025 11:26 โ€” ๐Ÿ‘ 10    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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a man wearing suspenders and a watch looks down in front of a machine Alt: Alarn Turing looks down in front of a machine

In 1950, Alan Turing - while at @manchester.ac.uk - proposed a simple but profound experiment: can a machine convincingly imitate human thought?

We now call it the Turing Test. ๐Ÿง ๐Ÿ’ป

16.09.2025 12:33 โ€” ๐Ÿ‘ 10    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Oh thatโ€™s interesting. Sorry to interrupt the thread, thatโ€™s amazing software btw!

21.09.2025 06:21 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Gene Therapy Can Restore Myelin in Children with Fatal Brain Disorder MYR-101 gene therapy reduces N-acetylaspartate, increases myelin, and improves development in Canavan disease patients.

AAV related news. Restored enzyme activity in the brain www.insideprecisionmedicine.com/topics/preci...

21.09.2025 06:15 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Alan Turing wrote a paper on imprecision of matrix inversion is this related?

19.09.2025 21:50 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

โ™ฅ๏ธ

19.09.2025 21:46 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

You can sometimes request more time to review a manuscript

19.09.2025 21:42 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Wouldnโ€™t version control be more informative?

19.09.2025 21:41 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Agree with this point. In my former post, I came across a published paper linking to a data repository link that was broken. I emailed the site hosting the data to explain that the data was not available. My issue was opened for a month and never (to my knowledge) resolved.

19.09.2025 21:14 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Does the term โ€œlayoffโ€ accurately describe the end of postdoctoral funding when a postdoc is often a period of research that a scientist chooses to undertake?

18.09.2025 17:41 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Frontiers | Synthetic Biology in Pharmacology: Engineering Circuits and Cells for Therapeutics Synthetic biology, an interdisciplinary field blending principles from molecular biology, organic chemistry, computational modeling, and nanobiotechnology, f...

Excited to be a topic editor for:
Synthetic Biology in Pharmacology: Engineering Circuits and Cells for Therapeutics

We are seeking articles regarding:
- Artificial Cells for Drug Delivery
- Metabolic Engineering for Drug Production
- Synthetic Gene Circuits
tinyurl.com/38j4d6u4

๐Ÿงช๐Ÿ‘ฉโ€๐Ÿ”ฌ#Chemsky

12.09.2025 23:08 โ€” ๐Ÿ‘ 11    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
bims-proteo 2025-09-14 papers

This week's selection of articles on #proteostasis thanks to @biomednews.bsky.social -- biomed.news/bims-proteo/...
Highlight: ฮฑ-Synuclein aggregates inhibit ESCRT-III through sequestration and collateral degradation www.sciencedirect.com/science/arti...

14.09.2025 07:09 โ€” ๐Ÿ‘ 7    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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On this week, 40 years ago, my friend Ralph Isberg, then a postdoc with Stan Falkow, reported the discovery of the 1st invasin gene in @nature.com "We report here the identification of a single genetic locus from this organism (Y. pseudotuberculosis) that is sufficient to convert the innocuous

13.09.2025 13:08 โ€” ๐Ÿ‘ 31    ๐Ÿ” 13    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
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NHS Charities Together NHS Charities Together is the national charity caring for the NHS. Help us make healthcare better for everyone.

I found this article for some light weekend reading. Healthcare premises cost guides - outdated but interesting nonetheless

www.england.nhs.uk/wp-content/u...

Next time when buying a flag (~ยฃ5) Why not recycle cardboard, make your own & donate the cost?

nhscharitiestogether.co.uk?utm_source=g...

14.09.2025 10:12 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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In a new work with Joseph Rich and Conrad Oakes we tackle the problem of how to best organize alluvial plots. We formalize two optimization problems and develop a solution for them based on the neighbornet algorithm, implemented in the program wompwomp: github.com/pachterlab/w...

05.09.2025 12:20 โ€” ๐Ÿ‘ 32    ๐Ÿ” 10    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 0

scVerse conference is at Stanford this year! Encourage folks (especially Bay Area/West coast folks) to sign up and attend. Cool workshops/talks and other events + great community of developers for one of the most widely used open source software for single cell data analysis!

26.08.2025 18:50 โ€” ๐Ÿ‘ 20    ๐Ÿ” 9    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

We are excited to host Drs. Amit Sharma and Xiaoyan Xu for our upcoming #GDTcellclub virtual talks.

Date: August 21, 2025
Time: 12pm (New York) | 5pm (London, UK)

nyulangone.zoom.us/j/9589051706...

*Talks will be recorded* for those who are unable to attend live.

16.08.2025 16:29 โ€” ๐Ÿ‘ 4    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2
Subjects to teach: Information Technology - How to create accessible documents, focusing on how to: Add and write alt text, Structure heading levels, Provide context with links, Clearly layout content, Provide document and page titles, Check a reading order on a PDF, and run accessibility checks.

Subjects to teach: Information Technology - How to create accessible documents, focusing on how to: Add and write alt text, Structure heading levels, Provide context with links, Clearly layout content, Provide document and page titles, Check a reading order on a PDF, and run accessibility checks.

Subjects to teach: Coding and Web Development -
Introduce students to: Ways of testing work with a range of assistive technologies such as a screen reader and keyboard accessibility, Web Content Accessibility Guidelines (WCAG), POUR Design Principles, and Semantic HTML

Subjects to teach: Coding and Web Development - Introduce students to: Ways of testing work with a range of assistive technologies such as a screen reader and keyboard accessibility, Web Content Accessibility Guidelines (WCAG), POUR Design Principles, and Semantic HTML

Subjects to teach: Filmmaking and Media - Raise awareness to students on: The need for captions on videos, Providing transcripts with podcasts and visual media, When to add audio descriptions, and Avoiding using flashing imagery

Subjects to teach: Filmmaking and Media - Raise awareness to students on: The need for captions on videos, Providing transcripts with podcasts and visual media, When to add audio descriptions, and Avoiding using flashing imagery

Subjects to teach: Graphic design - Demonstrate to students how to: Check colour contrast ratios, and create inclusive designs using clear typography; considering font choices, spacing, backgrounds and formatting

Subjects to teach: Graphic design - Demonstrate to students how to: Check colour contrast ratios, and create inclusive designs using clear typography; considering font choices, spacing, backgrounds and formatting

A UN survey found that 67% of people believe in a better future with 15 to 17 year-olds being the most optimistic. To achieve this, we share ways that educators can bring #accessibility skills into lessons to help build an inclusive digital world for future generations.

#InternationalYouthDay #A11y

12.08.2025 07:55 โ€” ๐Ÿ‘ 8    ๐Ÿ” 4    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1

Happy @diffuseproject.bsky.social launch day! Check out our latest effort. We're grappling with how to better understand protein dynamics and capture/share the information that would best allow the community to make use of that data. Take a look!

12.08.2025 16:48 โ€” ๐Ÿ‘ 15    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@maewoods is following 19 prominent accounts