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Owen Forbes

@owenforbes.bsky.social

Translational data science | Bayesian stats | Bridging data & impact | he/him

409 Followers  |  684 Following  |  11 Posts  |  Joined: 17.11.2024  |  2.0905

Latest posts by owenforbes.bsky.social on Bluesky

Congratulations to my student, Maggie Ma, for publishing her first #rstats package {ggincerta} on CRAN ๐Ÿฅณ

Spatial uncertainty visualisation (bivariate, pixel, exceedance, glyph), like {Vizumap}, but fully integrated with ggplot2 -- a much simpler API with all the advantages of the ggplot2 system.

16.11.2025 04:50 โ€” ๐Ÿ‘ 70    ๐Ÿ” 12    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Bird migration is changing. What does this reveal about our planet? โ€“ visualised Bird migrations rank as one of natureโ€™s greatest spectacles. Thanks to GPS tracking, scientists are uncovering extraordinary insights into ancient and mysterious journeys โ€“ and new threats that are re...

www.theguardian.com/environment/...

Everyone deserves to see this beautiful piece of science communication.
๐ŸŒ๐Ÿงช๐Ÿชถ
There are many things I love about this, but I think number one is that it features the story a little known, but amazing seabird species, the Desertas Petrel.

24.10.2025 01:57 โ€” ๐Ÿ‘ 111    ๐Ÿ” 44    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 4
the galaxias hex logo showing a fun-coloured illustration of a green galaxias fish. The head, gills and fin in the centre with light green on the underside, green lips and wavy shades of green on its back, with blue and orange markings by its eye and gills. The background is light orangey-salmony colour in a sunburst style

the galaxias hex logo showing a fun-coloured illustration of a green galaxias fish. The head, gills and fin in the centre with light green on the underside, green lips and wavy shades of green on its back, with blue and orange markings by its eye and gills. The background is light orangey-salmony colour in a sunburst style

๐ŸšจOur new package {galaxias} is released in R & Python today! ๐Ÿšจ

๐Ÿ“ฆ galaxias makes it easy to standardise data to Darwin Core, the accepted format for sharing ecological data with infrastructures like @gbif.org and the Atlas of Living Australia

galaxias.ala.org.au

#rstats #python ๐Ÿงช๐ŸŒ๐ŸŸ

A thread ๐Ÿงต๐Ÿ‘‡

23.10.2025 02:41 โ€” ๐Ÿ‘ 56    ๐Ÿ” 18    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 4
Plots indicating trends in sampling over time by number of specimens, number of unique species, and number of spatial grids (1 degree lat/long) represented globally

Left column = Chordata; middle column = Plantae; right column = Arthropoda. Top row = number of specimens per year; middle row = number of unique species per year; bottom row = spatial extent based on the number of 1-degree grid cells with specimens observed per year. Blue, green and red lines indicate LOESS (locally estimated scatterplot smoothing) curves for specimen counts by collection year for Chordata, Plantae and Arthropoda, respectively.

Plots indicating trends in sampling over time by number of specimens, number of unique species, and number of spatial grids (1 degree lat/long) represented globally Left column = Chordata; middle column = Plantae; right column = Arthropoda. Top row = number of specimens per year; middle row = number of unique species per year; bottom row = spatial extent based on the number of 1-degree grid cells with specimens observed per year. Blue, green and red lines indicate LOESS (locally estimated scatterplot smoothing) curves for specimen counts by collection year for Chordata, Plantae and Arthropoda, respectively.

Patterns of decline vary across taxa and regions - biggest declines seen for plants and vertebrates, with insects showing more recent peak and decline

21.10.2025 05:33 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
This heatmap displays the change in the mean annual count of specimens collected between 2010 and 2019 compared to the reference period of 1970โ€“2009, in 1-degree latitude-longitude grids, across all three taxonomic groups combined (Chordata, Plantae and Arthropoda). 

Substantial patterns of decline are seen, particularly apparent across areas with historically high levels of collecting across Australia, North America, Western Europe

This heatmap displays the change in the mean annual count of specimens collected between 2010 and 2019 compared to the reference period of 1970โ€“2009, in 1-degree latitude-longitude grids, across all three taxonomic groups combined (Chordata, Plantae and Arthropoda). Substantial patterns of decline are seen, particularly apparent across areas with historically high levels of collecting across Australia, North America, Western Europe

We're collecting less than half as many biodiversity specimens as in the 1960s-1980s, at a time when they're more important than ever for climate & ecology science. Natural history collections provide crucial data that no other source can match. Our new paper in Nature Comms: doi.org/10.1038/s414...

21.10.2025 05:23 โ€” ๐Ÿ‘ 9    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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๐Ÿ“ธAn incredible start to #IDW2025 today with over 800 delegates joining us in Brisbane/Meanjin and online from across the globe to share knowledge and build connections.

#SciDataCon #RDAplenary
@codata-isc.bsky.social @worlddatasystem.org @researchdataall.bsky.social

w/ @science.org.au

13.10.2025 11:54 โ€” ๐Ÿ‘ 9    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Pluralistic: The real (economic) AI apocalypse is nigh (27 Sep 2025) โ€“ Pluralistic: Daily links from Cory Doctorow

From Cory Doctorow: "AI is the asbestos we are shoveling into the walls of our society and our descendants will be digging it out for generations" damn I wish I had written that line
pluralistic.net/2025/09/27/e...

29.09.2025 22:11 โ€” ๐Ÿ‘ 120    ๐Ÿ” 28    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
An adapted version of the current HiTOP model, including 'psychosis' and 'emotional dysfunction' superspectra and omitting the homogeneous symptom component/maladaptive traits lists

An adapted version of the current HiTOP model, including 'psychosis' and 'emotional dysfunction' superspectra and omitting the homogeneous symptom component/maladaptive traits lists

Look no further for an *excellent* overview of HiTOP! This chapter for the upcoming Oxford Handbook of Dimensional Models in Psychopathology does a fantastic job of pulling everything together.

Tam Pham is an absolute superstar and I feel very lucky to work with her โœจ

osf.io/preprints/ps...

29.09.2025 09:37 โ€” ๐Ÿ‘ 41    ๐Ÿ” 12    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Abstract: Under the banner of progress, products have been uncritically adopted or
even imposed on users โ€” in past centuries with tobacco and combustion engines, and in
the 21st with social media. For these collective blunders, we now regret our involvement or
apathy as scientists, and society struggles to put the genie back in the bottle. Currently, we
are similarly entangled with artificial intelligence (AI) technology. For example, software updates are rolled out seamlessly and non-consensually, Microsoft Office is bundled with chatbots, and we, our students, and our employers have had no say, as it is not
considered a valid position to reject AI technologies in our teaching and research. This
is why in June 2025, we co-authored an Open Letter calling on our employers to reverse
and rethink their stance on uncritically adopting AI technologies. In this position piece,
we expound on why universities must take their role seriously toa) counter the technology
industryโ€™s marketing, hype, and harm; and to b) safeguard higher education, critical
thinking, expertise, academic freedom, and scientific integrity. We include pointers to
relevant work to further inform our colleagues.

Abstract: Under the banner of progress, products have been uncritically adopted or even imposed on users โ€” in past centuries with tobacco and combustion engines, and in the 21st with social media. For these collective blunders, we now regret our involvement or apathy as scientists, and society struggles to put the genie back in the bottle. Currently, we are similarly entangled with artificial intelligence (AI) technology. For example, software updates are rolled out seamlessly and non-consensually, Microsoft Office is bundled with chatbots, and we, our students, and our employers have had no say, as it is not considered a valid position to reject AI technologies in our teaching and research. This is why in June 2025, we co-authored an Open Letter calling on our employers to reverse and rethink their stance on uncritically adopting AI technologies. In this position piece, we expound on why universities must take their role seriously toa) counter the technology industryโ€™s marketing, hype, and harm; and to b) safeguard higher education, critical thinking, expertise, academic freedom, and scientific integrity. We include pointers to relevant work to further inform our colleagues.

Figure 1. A cartoon set theoretic view on various terms (see Table 1) used when discussing the superset AI
(black outline, hatched background): LLMs are in orange; ANNs are in magenta; generative models are
in blue; and finally, chatbots are in green. Where these intersect, the colours reflect that, e.g. generative adversarial network (GAN) and Boltzmann machine (BM) models are in the purple subset because they are
both generative and ANNs. In the case of proprietary closed source models, e.g. OpenAIโ€™s ChatGPT and
Appleโ€™s Siri, we cannot verify their implementation and so academics can only make educated guesses (cf.
Dingemanse 2025). Undefined terms used above: BERT (Devlin et al. 2019); AlexNet (Krizhevsky et al.
2017); A.L.I.C.E. (Wallace 2009); ELIZA (Weizenbaum 1966); Jabberwacky (Twist 2003); linear discriminant analysis (LDA); quadratic discriminant analysis (QDA).

Figure 1. A cartoon set theoretic view on various terms (see Table 1) used when discussing the superset AI (black outline, hatched background): LLMs are in orange; ANNs are in magenta; generative models are in blue; and finally, chatbots are in green. Where these intersect, the colours reflect that, e.g. generative adversarial network (GAN) and Boltzmann machine (BM) models are in the purple subset because they are both generative and ANNs. In the case of proprietary closed source models, e.g. OpenAIโ€™s ChatGPT and Appleโ€™s Siri, we cannot verify their implementation and so academics can only make educated guesses (cf. Dingemanse 2025). Undefined terms used above: BERT (Devlin et al. 2019); AlexNet (Krizhevsky et al. 2017); A.L.I.C.E. (Wallace 2009); ELIZA (Weizenbaum 1966); Jabberwacky (Twist 2003); linear discriminant analysis (LDA); quadratic discriminant analysis (QDA).

Table 1. Below some of the typical terminological disarray is untangled. Importantly, none of these terms
are orthogonal nor do they exclusively pick out the types of products we may wish to critique or proscribe.

Table 1. Below some of the typical terminological disarray is untangled. Importantly, none of these terms are orthogonal nor do they exclusively pick out the types of products we may wish to critique or proscribe.

Protecting the Ecosystem of Human Knowledge: Five Principles

Protecting the Ecosystem of Human Knowledge: Five Principles

Finally! ๐Ÿคฉ Our position piece: Against the Uncritical Adoption of 'AI' Technologies in Academia:
doi.org/10.5281/zeno...

We unpick the tech industryโ€™s marketing, hype, & harm; and we argue for safeguarding higher education, critical
thinking, expertise, academic freedom, & scientific integrity.
1/n

06.09.2025 08:13 โ€” ๐Ÿ‘ 3355    ๐Ÿ” 1712    ๐Ÿ’ฌ 102    ๐Ÿ“Œ 308
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Happy National Wattle Day! ๐Ÿ’›๐Ÿ’š

Did you know Australia is home to nearly 1,000 species of wattle?

From Golden Wattle, our national floral emblem (Acacia pycnantha), to the rare pink-purple blooms of Acacia purpureopetala, wattles are as diverse as the landscapes they grow in.

#NationalWattleDay

01.09.2025 06:33 โ€” ๐Ÿ‘ 53    ๐Ÿ” 16    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 2
29.08.2025 01:42 โ€” ๐Ÿ‘ 53    ๐Ÿ” 9    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1
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Designing AI tools that support critical thinking - Vaughn Tan Current AI interfaces lull us into thinking weโ€™re talking to something that can make meaningful judgments about whatโ€™s valuable. Weโ€™re not โ€” weโ€™re

Current AI UX tricks us into thinking we're talking to something that can make value judgments. We're not. So I tested a prototype UX for an AI that helps users learn to think critically. Students went from vague to sharp arguments in 2hrs.

More here: vaughntan.org/aiux

20.08.2025 14:46 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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A Teen Was Suicidal. ChatGPT Was the Friend He Confided In.

Adam Raine, 16, died from suicide in April after months on ChatGPT discussing plans to end his life. His parents have filed the first known case against OpenAI for wrongful death.

Overwhelming at times to work on this story, but here it is. My latest on AI chatbots: www.nytimes.com/2025/08/26/t...

26.08.2025 13:01 โ€” ๐Ÿ‘ 4638    ๐Ÿ” 1737    ๐Ÿ’ฌ 113    ๐Ÿ“Œ 577
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AI Eroded Doctorsโ€™ Ability to Spot Cancer Within Months in Study Artificial intelligence, touted for its potential to transform medicine, led to some doctors losing skills after just a few months in a new study.

โ€œThe AI in the study probably prompted doctors to become over-reliant on its recommendations, โ€˜leading to clinicians becoming less motivated, less focused, and less responsible when making cognitive decisions without AI assistance,โ€™ the scientists said in the paper.โ€

12.08.2025 23:41 โ€” ๐Ÿ‘ 5255    ๐Ÿ” 2581    ๐Ÿ’ฌ 115    ๐Ÿ“Œ 539

Grateful for the opportunity to collaborate with Pete Thrall, Andrew Young and Cheng Soon Ong @ml4x.bsky.social on this work

04.08.2025 01:54 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Data-driven research prioritisation exampleโ€”sampling design for the bare-nosed wombat (Vombatus ursinus) in New South Wales, Australia, based on observation and specimen data from GBIF. (A) Value of Information (VOI) map showing expected information gain from additional sampling (darker blueโ€‰=โ€‰higher gain), calculated using a binomial model of annual observations in each 50โ€‰km grid, with expected information gain calculated using Kullbackโ€“Leibler divergence between current and updated probability distributions after simulated sampling. (B) Need for Information (NFI) map based on habitat loss percentiles (darker greenโ€‰=โ€‰greater habitat loss), derived from the Habitat Condition Assessment System. (C) Cost of Information (COI) map using the Australian Bureau of Statistics' remoteness classification system (darker purpleโ€‰=โ€‰metropolitan areas with higher accessibility and lower expected sampling costs). (D) Consensus diagramโ€”VOI-NFI quadrant analysis revealing priority sampling locations (upper right quadrant) where both information value and ecological need are high. In Panel A, grid cells (50โ€‰km) with insufficient data appear in grey (fewer than 2 total observations per grid). See Data S1 for details on methodology, data sources, and implementation.

Data-driven research prioritisation exampleโ€”sampling design for the bare-nosed wombat (Vombatus ursinus) in New South Wales, Australia, based on observation and specimen data from GBIF. (A) Value of Information (VOI) map showing expected information gain from additional sampling (darker blueโ€‰=โ€‰higher gain), calculated using a binomial model of annual observations in each 50โ€‰km grid, with expected information gain calculated using Kullbackโ€“Leibler divergence between current and updated probability distributions after simulated sampling. (B) Need for Information (NFI) map based on habitat loss percentiles (darker greenโ€‰=โ€‰greater habitat loss), derived from the Habitat Condition Assessment System. (C) Cost of Information (COI) map using the Australian Bureau of Statistics' remoteness classification system (darker purpleโ€‰=โ€‰metropolitan areas with higher accessibility and lower expected sampling costs). (D) Consensus diagramโ€”VOI-NFI quadrant analysis revealing priority sampling locations (upper right quadrant) where both information value and ecological need are high. In Panel A, grid cells (50โ€‰km) with insufficient data appear in grey (fewer than 2 total observations per grid). See Data S1 for details on methodology, data sources, and implementation.

Our new Ecology Letters paper shows how natural history collections can use Bayesian decision theory & VOI to transform sampling and resourcing. Moving beyond taxonomy-focused collecting to strategic approaches, maximising impact for climate science, genomics & conservation
doi.org/10.1111/ele.70188

04.08.2025 01:53 โ€” ๐Ÿ‘ 6    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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The In-Between Cooper is lost. Ever since his father left their familyโ€ฆ

"The In-Between"? www.goodreads.com/book/show/53...

from this thread old.reddit.com/r/whatsthatb... and here old.reddit.com/r/whatsthatb...

21.07.2025 04:52 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 1

Calling all stats nerds to the heart of Australia to discuss all things #Biometrics! ๐Ÿจ at the upcoming Biometrics in the Bush Capital meeting #BIB25

โšก Abstract submission has been extended!

We'll see you there!

16.07.2025 03:42 โ€” ๐Ÿ‘ 8    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

1/ NEW R PACKAGE! For estimating the impact of potential interventions on multiple mediators in countering exposure effects (led by @cttc101.bsky.social)

- Paper๐Ÿ‘‰ tinyurl.com/ye26jsps
- Package๐Ÿ‘‰ tinyurl.com/yuh4kens

Thread shows published examples of how the method can be used! #EpiSky #CausalSky

10.07.2025 01:30 โ€” ๐Ÿ‘ 29    ๐Ÿ” 11    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
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a black and white photo of a woman in a plaid shirt with the words `` wake up # flawless '' . Alt: Beyoncรฉ dances in a plaid shirt with the words `` wake up # flawless '' .

Introducing {flawless} - a nested framework for analysing functional time series. Versatile insights for functional data across research domains, including neuroscience & mental health.

pubmed.ncbi.nlm.nih.gov/40577684/

Super stoked to share our new paper and matching Beyoncรฉ gif ๐Ÿ˜…๐ŸŽ‰๐Ÿ’ƒ #flawless

30.06.2025 04:48 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

people are not built for having an evil genie whispering in their ear about how amazing and perfect they are and confirming every bias they ever had, to say nothing of the constant vigilance for lies and misinformation

15.06.2025 22:53 โ€” ๐Ÿ‘ 846    ๐Ÿ” 224    ๐Ÿ’ฌ 13    ๐Ÿ“Œ 14
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Pro-AI Subreddit Bans 'Uptick' of Users Who Suffer from AI Delusions โ€œAI is rizzing them up in a very unhealthy way at the moment.โ€

We also get many emails from people suffering from these delusions at DAIR.
www.404media.co/pro-ai-subre...

02.06.2025 20:59 โ€” ๐Ÿ‘ 111    ๐Ÿ” 34    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 5
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Postdoctoral Fellow - Canberra / ACT, ACT, Australia Classification:ย Academic Level ASalary package:ย $85,010 - $106,702 per annum plus 17% superannuationTerm: Full time, Continuing (contingent funded) This position is continuing (contingent funded). The...

Looking for a postdoc in stats or a job with computer vision / deep learning?

Postdoctoral position in statistics is now out at Australian National University!

jobs.anu.edu.au/jobs/postdoc...

And also APPN is looking for a data lead @scienceanu.bsky.social

jobs.anu.edu.au/jobs/data-le...

02.04.2025 02:32 โ€” ๐Ÿ‘ 20    ๐Ÿ” 10    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Hi #rstats friends!

I'm starting consulting! I've had a great journey in academia working with brilliant people, and while it's bittersweet (and a bit scary!), I'm excited for this next step. I'll still be maintaining {greta} and am hoping to be even more involved with the R community.

1/n

20.03.2025 00:35 โ€” ๐Ÿ‘ 98    ๐Ÿ” 23    ๐Ÿ’ฌ 5    ๐Ÿ“Œ 1
Centers for Disease Control and Prevention

๐Ÿšจ Public health data disappeared. Weโ€™re restoring it. ๐Ÿšจ

RestoredCDC.org preserves unaltered CDC content after key pages were removed or changed without notice.

Public data belongs to all of us. ๐Ÿ”— RestoredCDC.org

#PublicHealth #ScienceTransparency #RestoredCDC

03.03.2025 13:40 โ€” ๐Ÿ‘ 1239    ๐Ÿ” 567    ๐Ÿ’ฌ 35    ๐Ÿ“Œ 28
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Francis Collins, the NIH Director for 12 years, led the Human Genome Project and other NIH efforts for 32 years, resigned today. Key words from his resignation letter
www.nytimes.com/2025/03/01/u...

01.03.2025 18:07 โ€” ๐Ÿ‘ 3153    ๐Ÿ” 1394    ๐Ÿ’ฌ 62    ๐Ÿ“Œ 95
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Firing workers from US weather and oceans agency risks lives and the economy, former agency heads warn NOAA's 301 billion weather forecasts every year reach 96% of American households.

Itโ€™s not just the USA at risk.

Australia, and many other countries, rely heavily on NOAAโ€™s satellites for weather monitoring and forecasting, tracking cyclones, and measuring climate change.

www.pbs.org/newshour/nat...

01.03.2025 06:39 โ€” ๐Ÿ‘ 292    ๐Ÿ” 65    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 5
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Microsoft Study Finds AI Makes Human Cognition โ€œAtrophied and Unpreparedโ€ Researchers find that the more people use AI at their job, the less critical thinking they use.

New Microsoft study finds that using generative AI at work makes employees' critical thinking skills "atrophied and unprepared"

www.404media.co/microsoft-st...

10.02.2025 16:00 โ€” ๐Ÿ‘ 1117    ๐Ÿ” 334    ๐Ÿ’ฌ 39    ๐Ÿ“Œ 147
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AI at Google: our principles Weโ€™re announcing seven principles to guide our work in AI.

This is what they were:

blog.google/technology/a...

04.02.2025 19:20 โ€” ๐Ÿ‘ 12    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Google has removed its Responsible AI Principles.
This is actually a pretty big deal.

04.02.2025 19:29 โ€” ๐Ÿ‘ 266    ๐Ÿ” 125    ๐Ÿ’ฌ 10    ๐Ÿ“Œ 12

@owenforbes is following 20 prominent accounts