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Jonathan Schaul

@jonsch.one.bsky.social

biomedical / data science background. i like to build web applications.

15 Followers  |  69 Following  |  10 Posts  |  Joined: 13.11.2024  |  1.7249

Latest posts by jonsch.one on Bluesky

Diagram showing MCP-enabled research architecture. Part A illustrates the flow between MCP servers (including BioContextAI Knowledgebase MCP and Community-developed MCP servers), Agentic systems connected via Model Context Protocol, and researchers asking research questions. MCP servers connect to knowledgebases and specialized software. Part B details the BioContextAI project components, divided into Registry (Schema.org ontology, Web interface, Open source licensing, MCP-enabled chatbot, Continuous integration) and Community (Documentation, Community forums, MCP server reviews, Shareable collections, Interoperability with tools like BioChatter).

Diagram showing MCP-enabled research architecture. Part A illustrates the flow between MCP servers (including BioContextAI Knowledgebase MCP and Community-developed MCP servers), Agentic systems connected via Model Context Protocol, and researchers asking research questions. MCP servers connect to knowledgebases and specialized software. Part B details the BioContextAI project components, divided into Registry (Schema.org ontology, Web interface, Open source licensing, MCP-enabled chatbot, Continuous integration) and Community (Documentation, Community forums, MCP server reviews, Shareable collections, Interoperability with tools like BioChatter).

Preprint alert ๐Ÿšจ Do you use chatbots in your work or even build MCP servers and agentic systems yourself?

Or would you like to find a way to use biomedical tools using natural language?

Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...

29.07.2025 12:41 โ€” ๐Ÿ‘ 13    ๐Ÿ” 10    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

Decoupling.

01.03.2025 08:11 โ€” ๐Ÿ‘ 163    ๐Ÿ” 56    ๐Ÿ’ฌ 10    ๐Ÿ“Œ 0

yes

06.01.2025 19:09 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
The State of Software Engineering ๐Ÿ”จ โ€” with Kent Beck
YouTube video by Refactoring The State of Software Engineering ๐Ÿ”จ โ€” with Kent Beck

Writing software with AI gives you remarkable leverage on your taste. The gap between taste and skill is now smaller than ever beforeโ€”and it's continuously shrinking with each new model release.

youtu.be/G6uBAwVrxHw?...

12.12.2024 10:32 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

dropshipping the next ai wrapper right to your doorstep.

10.12.2024 06:45 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

next iteration :)

05.12.2024 12:49 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Post image

Currently thinking about how to effectively visualize signaling pathways.
Here is what i came up with today: protein-visualization.vercel.app

Let me know what you think :)

04.12.2024 12:03 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

exciting times

25.11.2024 21:02 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

i feel like even if the models don't improve much from now on, there is so much potential yet to be exploited in these language models :)

25.11.2024 19:59 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

done! such a great series :)

25.11.2024 17:01 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

for example building the same project with different technologies and then sharing thoughts on how they compare in dev. experience and performance is valuable and fun to watch content. like theo's recent video, building the pokemon app with 5 different stacks.

22.11.2024 14:05 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preview
Vercel now supports one-click Bluesky DNS configuration - Vercel The best way to deploy your Next.js site.

Use your domain as your Bluesky handle. Get started with one-click on Vercel.

vercel.com/changelog/ve...

15.11.2024 15:40 โ€” ๐Ÿ‘ 399    ๐Ÿ” 50    ๐Ÿ’ฌ 14    ๐Ÿ“Œ 13

like your channel a lot! great work ๐ŸŽ‰๐Ÿ˜Š

14.11.2024 06:25 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

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