Diagram showing MCP-enabled research architecture. Part A illustrates the flow between MCP servers (including BioContextAI Knowledgebase MCP and Community-developed MCP servers), Agentic systems connected via Model Context Protocol, and researchers asking research questions. MCP servers connect to knowledgebases and specialized software. Part B details the BioContextAI project components, divided into Registry (Schema.org ontology, Web interface, Open source licensing, MCP-enabled chatbot, Continuous integration) and Community (Documentation, Community forums, MCP server reviews, Shareable collections, Interoperability with tools like BioChatter).
Preprint alert ๐จ Do you use chatbots in your work or even build MCP servers and agentic systems yourself?
Or would you like to find a way to use biomedical tools using natural language?
Then check out biocontext.ai, now out on bioRxiv: www.biorxiv.org/content/10.1...
29.07.2025 12:41 โ ๐ 13 ๐ 10 ๐ฌ 1 ๐ 2
Decoupling.
01.03.2025 08:11 โ ๐ 163 ๐ 56 ๐ฌ 10 ๐ 0
yes
06.01.2025 19:09 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
YouTube video by Refactoring
The State of Software Engineering ๐จ โ with Kent Beck
Writing software with AI gives you remarkable leverage on your taste. The gap between taste and skill is now smaller than ever beforeโand it's continuously shrinking with each new model release.
youtu.be/G6uBAwVrxHw?...
12.12.2024 10:32 โ ๐ 1 ๐ 0 ๐ฌ 0 ๐ 0
dropshipping the next ai wrapper right to your doorstep.
10.12.2024 06:45 โ ๐ 1 ๐ 0 ๐ฌ 1 ๐ 0
next iteration :)
05.12.2024 12:49 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
Currently thinking about how to effectively visualize signaling pathways.
Here is what i came up with today: protein-visualization.vercel.app
Let me know what you think :)
04.12.2024 12:03 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 1
exciting times
25.11.2024 21:02 โ ๐ 0 ๐ 0 ๐ฌ 0 ๐ 0
i feel like even if the models don't improve much from now on, there is so much potential yet to be exploited in these language models :)
25.11.2024 19:59 โ ๐ 0 ๐ 0 ๐ฌ 1 ๐ 0
done! such a great series :)
25.11.2024 17:01 โ ๐ 1 ๐ 0 ๐ฌ 1 ๐ 0
for example building the same project with different technologies and then sharing thoughts on how they compare in dev. experience and performance is valuable and fun to watch content. like theo's recent video, building the pokemon app with 5 different stacks.
22.11.2024 14:05 โ ๐ 1 ๐ 0 ๐ฌ 1 ๐ 0
Vercel now supports one-click Bluesky DNS configuration - Vercel
The best way to deploy your Next.js site.
Use your domain as your Bluesky handle. Get started with one-click on Vercel.
vercel.com/changelog/ve...
15.11.2024 15:40 โ ๐ 399 ๐ 50 ๐ฌ 14 ๐ 13
like your channel a lot! great work ๐๐
14.11.2024 06:25 โ ๐ 1 ๐ 0 ๐ฌ 1 ๐ 0
Community initiative for biomedical MCP servers ๐ค๐งฌ
Automatically shares new MCP servers from the Registry
Find out more at: https://biocontext.ai
Computational medicine @ AU
Founder @ KH Biotechnology & medprofs
Interested in spatial omics, immunology, cancer & ageing
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๐ฒ๐ฝ Staff Scientist at EMBL-EBI (@ebi.embl.org and @saezlab.bsky.social) studying the molecular biology of multicellular disease processes, cellular cooperation and its parallels to ecology and social systems
CompBio/Data Science in Drug Discovery ๐ค
โข CompBio @Boehringer Ingelheim
โข Cambridge PhD & Heidelberg BSc/MSc
โข Also: ๐ชด๐บ๐ฒ๐
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https://web.tecnico.ulisboa.pt/emanuel.v.goncalves/
Computational systems biology - research team lead at Turbine. Previously post-doc at RWTH Aachen and Semmelweis.
๐ฎ๐น๐ช๐บ | Research Assistant at @saezlab.bsky.social (Heidelberg University ๐ฉ๐ช) | MSc in Bioinformatics for Computational Genomics ๐งฌ @UniMI, in Computer Science and Engineering ๐ป @PoliMI | #ML #AI #CompBio #omics #Bioinformatics #Engineering #OpenSource