MEPGT

Hey Yaniv Brandvain is not on Bluesky but his most recent biostats ebook is live ybrandvain.github.io/biostats/. His stats resources have been so helpful to me as I develop my own stats course, so check it out. Github repo here: github.com/ybrandvain/b...

🙌Very important method! I have tested in many plants species and got robust values under kind help of Bastiaan (he is a very nice guy!). Now pulished in Genome Biology
doi.org/10.1186/s130...

ParaMask: identify multicopy genomic regions, corrects major biases in WGS data

github.com/Fulgione-gro...

Cr. to Shen Tian

My main PhD work @monteirolab.bsky.social is now in @natecoevo.nature.com! We found a Hox gene promoter that helps butterflies🦋adjust their wing eyespots in response to seasonal temperatures🍃🍂, shedding light on the evolutionary origin of phenotypic plasticity. 1/9 www.nature.com/articles/s41...

Heat-driven functional extinction of Caribbean Acropora corals from Florida’s Coral Reef In 2023, a record-setting marine heat wave triggered the ninth mass coral bleaching event on Florida’s Coral Reef (FCR). We examined spatial patterns of heat exposure along the ~560-kilometer length o...

Results I'm sad to share but must be told - branching coral are now functionally extinct in Florida - to learn more check out the full study www.science.org/doi/10.1126/... and our personal summary theconversation.com/2-iconic-cor...

Faces of different guenon species to show their morphological differences

If you like genomics, speciation, and primates, this PhD position is for you! Unraveling the genomic architecture of speciation and gene flow in guenons, a diverse group of African monkeys. Funding through DTP. Do reach out with questions! #genomics #genome_assembly
evol.mcmaster.ca/brian/evoldi...

How many plant species are buzz pollinated? After more than six years in the making, our paper on the convergent evolution of buzz pollinated flowers is out in @journal-evo.bsky.social. Thanks @draverbee.bsky.social @roszenil.bsky.social and all co-authors for your hard work! doi.org/10.1093/evol...

Parallel shifts in differential gene expression reveal convergent miniaturization in fishes | PNAS Body size variation in vertebrates is a complex polygenic trait, tightly correlated with numerous aspects of a species’ biology, ecology, and physi...

Why are some species smaller than a paperclip while others grow longer than a school bus? How is body size evolution governed in animals? Out now in @pnas.org we tackle these longstanding questions through a genetic lens using my favorite group of fishes as our model!! www.pnas.org/doi/10.1073/...

Presenting on the important relationship between a project - @biogeneurope.bsky.social - and a community - @ergabiodiv.bsky.social at #LivingData2025

Quantitative Genetics in Natural Populations Phenotypes evolve under natural selection if, and only if, they are genetically variable. While evolutionary ecologists have long studied natural sele…

Myself and Alastair Wilson wrote an updated version of our 2016 primer to quantitative genetics in the wild: www.sciencedirect.com/science/arti.... Happy to share a copy if interested. It is also on research gate

A circular phylogeny of Malawi cichlids with inversion frequencies indicated for different taxa as rings around the tree.

Check out our new paper about chromosomal inversions in Malawi cichlids! 🐟🧬

Available here without a paywall: hdl.handle.net/10067/214834... (click on the ‘Full text (open access)’ link).

Nice work! R.M. Schweizer, et a., Museum genomics suggests long-term population decline in a putatively extinct bumble bee, Proc. Natl. Acad. Sci. U.S.A. 122 (43) e2509749122, doi.org/10.1073/pnas... (2025).

We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT

Out now on the cover of @journal-evo.bsky.social!

Led by Sarah Khalil, we took a genomic approach to investigate the hybrid zone between different-colored Red-backed Fairywren subspecies. We found some interesting candidate genes under selection. Check it out! academic.oup.com/evolut/advan...

A mosaic of modular variation at a single gene underpins convergent plumage coloration The reshuffling of genomic variation from multiple origins is an important contributor to phenotypic diversification, yet insights into the evolutionary trajectories of this combinatorial process and ...

1/9 New in @science.org www.science.org/doi/10.1126/science.ado8005
How does genetic architecture constrain evolutionary trajectories? To address this question, we inferred the genetic architecture of convergent plumage coloration and its evolutionary history in wheatears.

Celebrating the first 1000 genomes of Lepidoptera in Europe, sequenced at @sangerinstitute.bsky.social in collaboration with sampling hubs across the UK via the DToL project www.darwintreeoflife.org & across Europe via
@projectpsyche.bsky.social www.projectpsyche.org &
@10klepgenomes.bsky.social

Cryptic species can be phylogenetically old despite strong sex-biased dispersal Abstract. The impact of strongly differentiated populations on species delimitation due to limited or sex-biased dispersal remains challenging and under-ex

Extreme female philopatry in Pachypus beetles reveals 14 cryptic species!
🧬 Our study shows ancient speciation (5.3mya) despite limited dispersal, linked to the Messinian salinity crisis. Integrative taxonomy uncovers hidden diversity. #Taxonomy #Genetics url: academic.oup.com/sysbio/artic...

A very nice paper! @naturalselection.bsky.social Congrats!!!👍💪

Reference genome bias in light of species-specific chromosomal reorganization and translocations

The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies Abstract. Recent breakthroughs have enabled the accurate inference of large-scale genealogies. Through modelling the impact of recombination on the correla

Delighted that our paper about the distribution of genomic spans of clades/edges in genealogies (ARGs), and using this for detecting inversions and other SVs (and other phenomena that cause local disruption of recombination) is out in MBE academic.oup.com/mbe/article/... (1/n)

Genome Biology and Evolution October 2025 cover image with a photo of an Ethiopian White-eye.

Our paper on the temporal genomics of Ethiopian birds
has been highlighted (and gotten the cover) in @genomebiolevol.bsky.social
Article: doi.org/10.1093/gbe/evaf163
Highlight: doi.org/10.1093/gbe/evaf175

w/ @bourgeoisyann.bsky.social, @lcampillo.bsky.social, and others not on bsky

Snow leopards’ low genetic diversity puts future at risk A Stanford-led study reveals that snow leopards are the most genetically similar to each other among big cats, making them particularly vulnerable to drastic changes like the warming climate.

Snow leopards have the lowest genetic diversity of all big cats–a dubious distinction once held by cheetahs. It increases their risk of extinction in a warming climate. #Stanford-led #research #snowleopards @kasolari.bsky.social @petrovadmitri.bsky.social
news.stanford.edu/stories/2025...

Chimeric Reference Panels for Genomic Imputation Abstract. Despite transformative advances in genomic technologies, missing data remains a fundamental constraint that limits the full potential of genomic

Excited to share our new paper in
@GeneticsGSA
! We developed "Retriever," a novel method that enables high-quality genotype imputation in non-model organisms. 🧬 Congratulations to Charles on his first PhD paper!

Paper: doi.org/10.1093/gene...

A thread 🧵👇

Introgression and Parental Conflict Underlie Repeated Occurrences of Postzygotic Isolation Postzygotic reproductive isolation is often thought to accumulate as a byproduct of neutral divergence. Yet, it frequently evolves rapidly, in line with non-neutral evolution. A major driver of intrin...

I'm so proud of this work!!! It was an incredible amount of effort that started when I was trapped in a greenhouse during the pandemic and is only now seeing the light of day. Kudos to Megan, Hagar, & Pia!

We'd love to hear your thoughts!
www.biorxiv.org/content/10.1...

I am extremely happy to see that our review on fossil tip-dating is out in early view in Systematic Biology! A huge thanks to all the authors of this massive project (@heckeberg.bsky.social, @basantakhakurel.bsky.social, Gustavo Darlim, and @hoehna.bsky.social)! academic.oup.com/sysbio/advan...

Reference genome choice compromises population genetic analyses Using a species-specific reference genome significantly improves the accuracy of population genetic analyses, as exemplified by mapping gray fox sequence data to genomes of several canid species. Mapping to a conspecific genome provides more reliable estimates of genetic variation, diversity, and evolutionary history.

Now online! Reference genome choice compromises population genetic analyses

Our paper Genomic diversity of the African malaria vector Anopheles funestus was published in Science today! It features inversions, selection in action, museum specimens and putative new ecotypes. doi.org/10.1126/scie...

Quaternary Habitat Fluctuations and Demographic Dynamics in Turtles Inferred From Environmental Niche Modelling and Whole Genome Data

doi.org/10.1111/1755...

Persistent Genomic Erosion in Whooping Cranes Despite Demographic Recovery

doi.org/10.1111/mec....

Characterisation of the Historic Demographic Decline of the British European Polecat Population

doi.org/10.1111/mec....

Figure 1A from the paper shows the distribution of black-headed (western) and rose-breasted grosbeaks (eastern) throughout North America. Small illustrations of males of each species are shown. Black-headed has a rusty orange breast and black head, while rose-breasted has a small reddish bib with a bright white belly. There is an inset map of South Dakota showing the transect across the hybrid zone

The first Aguillon Lab paper is officially out in early view at Evolution!! Led by postdoc @devonderaad.bsky.social, we’ve explored the hybrid zone between black-headed and rose-breasted grosbeaks in the Great Plains. #ornithology #hybridization #speciation #evolution doi.org/10.1093/evol...

Hybridization and introgression are major evolutionary processes. Since the 1940s, the prevailing view has been that they shape plants far more than animals. In our new study (www.science.org/doi/10.1126/...
), we find the opposite: animals exchange genes more, and for longer, than plants