Talley Lambert

it was already fun to look around the documentation for cmap (cmap-docs.readthedocs.io)

but @grosoane.bsky.social just added a very cool feature to toggle between color vision deficiencies. Watch your perceptually uniform color maps gain some kinks 😂

as a mild deutan myself, I appreciate it! 🙏

Gotcha. That sounds nice!

I’ve definitely been very happy with gh copilot agent as well, particularly with sonnet 4. my comment was as much about the humorous failure modes :)

Wouldn’t that depend as much (if not more) on the underlying model than the agent extension?

i'm generally thrilled with gh copilot agent recently.
There have been multiple very funny cases though where I have asked it to fix a broken test, and the "fix" came in the form of simply deleting the problematic test 😂

"well ... the tests PASS now don't they??"

Colorblind themes beta - GitHub Changelog Light and dark colorblind accessible themes are now available to all github.com users in a public beta. These themes swap colors such as red and green for orange and blue…

Oh actually, I’m an idiot… just use this 😅

github.blog/changelog/20...

😂

I think there’s a good degree of personal preference and subjectivity here. I like magenta here as indicating “danger” more than blue. But there would also be nothing wrong with blue, in terms of visibility

please accept this PR

```
:root {
--bgColor-danger-emphasis: magenta !important;
--fgColor-danger-emphasis: magenta !important;
--bgColor-danger: magenta !important;
--fgColor-danger: magenta !important;
}
```

custom github css

for you other colorblind coders out there, tired of missing the red X in your github actions logs

.color-fg-danger, .fgColor-danger {color: magenta !important;}
.octicon-x {color: magenta !important;}

you're welcome

GitHub - hxu296/tariff: The official repository for tariff The official repository for tariff. Contribute to hxu296/tariff development by creating an account on GitHub.

github.com/hxu296/tariff

Immunofluorescence image of a mouse brain slice, with nuclei (magenta) and microglia (orange) shown.

Zoomed in Immunofluorescence image from the full mouse brain slice, with nuclei (magenta) and microglia (orange) shown.

Steven has our Snouty-OPM running again after our lab move. He added projection mode, sensorless AO, and a new control GUI based on @talley.codes + crew's pymmcore-plus/pymmcore-gui. Here are some IF-labeled microglia (orange) in the middle of an uncleared 60um mouse brain slice. No deconvolution!

Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...

💻 Announcing the Boston Bioimage Analysis Course — BoBiAC!
Join us this July at Harvard Medical School in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by the IAC and CITE.
Apply by May 16th, 2025!

Mark Zuckerberg’s charity guts DEI after assuring staff it would continue Chan Zuckerberg Initiative ends internal inclusion efforts and ‘social advocacy’ grants and scrubs site of commitment

www.theguardian.com/technology/2...

wish I could say I was surprised...

Ah! Were we lucky enough to entice @pawamoy.bsky.social to Bluesky? :)

This document rom the griffe docs is *awesome*. Basically a missing manual on designing the public API for your Python package: extremely well written, with good tips for beginners and advanced devs alike.

mkdocstrings.github.io/griffe/guide...

GitHub - tlambert03/mkdocs-api-autonav Contribute to tlambert03/mkdocs-api-autonav development by creating an account on GitHub.

If you use mkdocs for your python docs, and want quick full API autogen (with navigation) try

github.com/tlambert03/m...

Particularly if you currently use the mkdocs-gen-files/literatenav/custom-script approach

🤞

Quantitative Imaging: From Acquisition to Analysis Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.

Join me, @talleylambert.bsky.social, @bethcimini.bsky.social, @florianjug.bsky.social & Hunter Elliott for our two week CSHL course on microscopy & image analysis starting March 24, 2025! Applications are due 1/31/25. meetings.cshl.edu/courses.aspx...

Yes, you can just call it, But it assumes you’ve previously set contrast limits, perhaps paid attention to data type, etc… do you have to deal with any of that in microfilm?

Very cool. It’s been on my list of things to do to see how easy it would be to add cmap to microfilm. It’s also, by the way, been on my mind to potentially add some simple convenience functions to cmap to colorize images… so feel free to PR if you found low hanging fruit

Well that was a fast uv convert! 😂. Love it

Nice visualization/demonstration 👍

Such a good book :)

@antoineruzette.bsky.social blends

Postdocs in Artificial Intelligence Human Technopole (HT) is an interdisciplinary life science research institute, created and supported by the Italian Government, with the aim of developing innovative strategies to improve human health

😱📣 BlueSky-ers: WE NEED YOUR HELP!!! 🙏
All of you who ever liked a lecture of mine...
All of you who liked one of the courses I teach in...
All of you I work(ed) with in one way or another...
All of you who see my desperation! 😜
PLEASE re-post! 🙏 careers.humantechnopole.it/o/postdoc-in...

Thanks microscopy nightmares!

Instead of panicking, we all just calmly nodded our heads and agreed: “yeah, this feels familiar”

Yes. thankfully your animations had prepared us emotionally 😂