Officially published in Communications Biology!
In this study, we developed an open chromatin-guided, interpretable machine learning pipeline to uncover cancer-specific nucleosomal fragment patterns directly from cell-free DNA.
📄 Published article: doi.org/10.1038/s420...
13.11.2025 05:54 — 👍 3 🔁 0 💬 1 📌 1
Excited to share our preprint "ATAC-seq Guided Interpretable Machine Learning Reveals Cancer-Specific Chromatin Features in Cell-free DNA"
16.01.2025 02:24 — 👍 5 🔁 1 💬 0 📌 0
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Professor at KTH, NY Genome Center, SciLifeLab, working on functional genomics and human genetics.
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👉 Ex-MD Anderson
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Genetics in Medicine, an official journal of @theacmg.bsky.social
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40+ years talking health and wellness on radio and podcasts. Harvard Med Sch, MD; Harvard, AM, Immunology; former Medical Editor, WBZ-AM, Boston.
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Team leader at CRUK National Biomarker Centre, University of Manchester.
https://cruknbc.org/research/nucleic-acids-biomarkers/
#liquidbiopsy #cfDNA #EV #multiomics
Oncologist & Scientist @ Peter MacCallum Cancer Centre and The University of Melbourne
Genomics & Bioinformatics Scientist at the University of Edinburgh | Head of Edinburgh Genomics | #Omics #NGS #LongReads 🧪🧬 🖥️
Opinions my own. He/Him
Lab: https://genomics.ed.ac.uk/
LinkedIn: https://www.linkedin.com/in/javiersantoyolopez/
Makes things up. Writes them down. Dreams about growing up but not yet.
🐏 phd’ing in bioinformatics & computational biology @ unc chapel hill | phanstiel lab | interests: genome org & function 🧬 | hhmi gilliam '24 | nsf grfp ‘22 | 🐅 occidental college ‘21 |🎙host, from where does it stem? | 🏘️ co-founder @sciforgood.bsky.social
Working @adelmanlab.bsky.social @hms-bcmp.bsky.social + Vik Khurana lab @mgbresearch.bsky.social. Previously at Eilers/Wolf Lab @uni-wuerzburg.de. Interested in transcription and dsRNA biology - with a special focus on RNA Pol II.
Zon lab NCI K00 postdoc | pediatric sarcoma PhD | Luger lab chromatin biochem MS | transcription and melanoma in #zebrafish 🐠 | she/her
chromatin biology and gene regulation | snRNAseq & scMultiome | Salmonid developmental biology
Core Scientist @roslininstitute @EdinburghUni | @FNucleosome co-organizer
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Skeets can be in English/Turkish/Farsi
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I study how genome sequence controls gene expression at Cornell.
Post doc with Mike E Greenberg at HMS, working on molecular neuroscience. Ph.D.at CSHL on identifying a novel family of cell type-specific cofactors. Co-organizer of Gene expression and RNA series, and Fragile nucleosome seminar.
Data science, genomics, software development. Formerly: Eukaryotic gene regulation, phage, graph genomes. On hiatus building distributed systems.
snystrom.com
Husband, dad to 3, son, brother, uncle, cousin, nephew. Fruit fly neuroscientist, geneticist. Professor, University of Iowa. He/him.
Associate Professor and Director of Graduate Studies. GPCRs and gene regulation in pancreatic cancer. Posts are mine.
