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Philip Ruthig

@philipruthig.bsky.social

Staff Scientist @erturklab.bsky.social, passionate neuroscientist, Light sheet microscopist, and Python aficionado.

150 Followers  |  103 Following  |  54 Posts  |  Joined: 22.09.2023  |  1.6993

Latest posts by philipruthig.bsky.social on Bluesky

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We are introducing LipiGo πŸ€—
A programmable DNA–lipid nanocarrier 🧬 with built-in targeting logic. It de-targets the liver and redirects mRNA delivery into lymphoid organs, enhancing therapies requiring the immune system. Precision delivery at the cell level isn't far! www.biorxiv.org/content/10.1...

04.11.2025 13:54 β€” πŸ‘ 13    πŸ” 10    πŸ’¬ 1    πŸ“Œ 2
Promotional poster for the LMU Open Science Center Summer School 2025 Public Lecture. The poster features a photo of speaker Prof. Dr. Richard McElreath. The text states the lecture focuses on science as amateur software development, time and date of lecture being 9:00-10:00 CEST on Wednesday September 17 2025, and instructions to register online. Logos of LMU Open Science Center, LMU, and UniversitΓ€tsbibliothek MΓΌnchen are displayed at the bottom.

Promotional poster for the LMU Open Science Center Summer School 2025 Public Lecture. The poster features a photo of speaker Prof. Dr. Richard McElreath. The text states the lecture focuses on science as amateur software development, time and date of lecture being 9:00-10:00 CEST on Wednesday September 17 2025, and instructions to register online. Logos of LMU Open Science Center, LMU, and UniversitΓ€tsbibliothek MΓΌnchen are displayed at the bottom.

πŸ’‘ Explore how practices from distributed, open-source software can make science more professional, open, and collaborative! Attend the β€œScience as amateur software development” lecture by Prof. Dr. @rmcelreath.bsky.social on Wed 17 Sept, 9:00.
πŸ‘‰ Register here: www.pretix.osc.lmu.de/lmu-osc/OSSS...

10.09.2025 09:57 β€” πŸ‘ 12    πŸ” 13    πŸ’¬ 2    πŸ“Œ 0

Wrote the same thing as a tweetorial on X, got a single interaction with the tweet. I guess it is finally time to leave that place for good

30.08.2025 06:15 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

😱

26.08.2025 09:43 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Arrangement of raw data, semantic, and instance segmentation of human corpus callosum fibers, acquired by transmission electron microscopy. The data used for this image were generated by Maria Morozova, David Edler von der Planitz, and Philip Ruthig. All cover Art was created by the MPI for Human Cognitive and Brain Sciences Graphics department (Andrea Sandmann)

Arrangement of raw data, semantic, and instance segmentation of human corpus callosum fibers, acquired by transmission electron microscopy. The data used for this image were generated by Maria Morozova, David Edler von der Planitz, and Philip Ruthig. All cover Art was created by the MPI for Human Cognitive and Brain Sciences Graphics department (Andrea Sandmann)

#Myelination enables faster signal propagation in the brain, but takes more energy & space. @philipruthig.bsky.social &co reveal how short- & long-range #WhiteMatter fibers differ, showing how these variations affect neural communication & processing efficiency @plosbiology.org πŸ§ͺ plos.io/4mq5tOy

22.08.2025 08:15 β€” πŸ‘ 10    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0

That leaves me to thank my excellent co-1st author David Edler von der Planitz, and our collaborators and co-supervisors @siawooshmr.bsky.social, @nikweiskopf.bsky.social, Evgeniya Kirilina, and Markus Morawski!

A collaborative project of @mpicbs.bsky.social and @unileipzig.bsky.social!

21.08.2025 12:38 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

That concludes the skeetorial - check the full paper @plosbiology.org: plos.io/4mq5tOy

21.08.2025 12:38 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Furthermore, we supply other scientists with the necessary functions that describe our experimental data - important for anyone who might want to simulate brain-wide activity!

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Based on this anatomical data, we estimate that corpus callosum fibers conduct signals ~25% faster than short white matter fibers, and show a higher portion of very fast fibers (>8m/s).

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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In contrast, the g-ratio distribution of both sets of fibers is almost identical!

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Additionally, both groups of fibers seems to have a large amount of fibers near the g-ratio of 0.6. This seems to be the equilibrium for long fibers where energy expenditure by the organism, space constraints, velocity and efficiency of signal transduction meet.

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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We fitted a generalized extreme value function (GEV) to all of the distributions and found that both axon diameter and myelin thickness is downscaled in shorter fibers.

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Using a fully automated deep learning analysis, we segmented each structure in the TEM data and analyzed the axonal diameter, myelin thickness, and g-ratio (ratio between axon radius & myelin thickness).

21.08.2025 12:38 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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To investigate this issue, we sampled white matter tissue from body donors from a variety of superficial white matter (mostly short fibers) and corpus callosum areas (very long fibers), and prepared them for transmission electron microscopy.

21.08.2025 12:38 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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How are human brain regions connected? Are the connecting axons thicker and more myelinated the longer these connecting fibers are?

In our recent paper we find that indeed, they are! Read the skeetorial below ⬇️⬇️⬇️

plos.io/4mq5tOy
#neuroscience #neuroskyence #whitematter #deeplearning

21.08.2025 12:38 β€” πŸ‘ 21    πŸ” 12    πŸ’¬ 3    πŸ“Œ 2

Out now in @plosbiology.org: our recent study on white matter myelination and axon diameters in long and short fibers of humans! Skeetorial coming soon :)

21.08.2025 11:49 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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When a microscope facility user asks about how to make a red/green overlay

14.07.2025 09:34 β€” πŸ‘ 70    πŸ” 8    πŸ’¬ 5    πŸ“Œ 0
Deep Piction hiring Chief Operating Officer in Greater Munich Metropolitan Area | LinkedIn Posted 10:54:20 AM. Chief Operating Officer (COO)Location: Munich, Germany (On-site) Employment Type: Full-timeAbout…See this and similar jobs on LinkedIn.

Our spin-off company is hiring a COO. (Stay tuned for more job offers)

www.linkedin.com/jobs/view/42...

23.06.2025 06:53 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

bsky.app/profile/matt...

21.06.2025 11:43 β€” πŸ‘ 9632    πŸ” 2165    πŸ’¬ 139    πŸ“Œ 34
Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/6LrYfMByymPnHP5/download/2025_OME-Zarr_sw_developer.pdf

Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/6LrYfMByymPnHP5/download/2025_OME-Zarr_sw_developer.pdf

Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/y4rBGFM6dXn8Jkr/download/2025_OME-Zarr_web_developer.pdf

Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/y4rBGFM6dXn8Jkr/download/2025_OME-Zarr_web_developer.pdf

πŸš€ We’re hiring again! Join @gerbi-gmb.de as a Software Developer!

πŸ’» Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

πŸ“£ Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via bit.ly/gerbi-jobs-2...

11.06.2025 08:25 β€” πŸ‘ 18    πŸ” 10    πŸ’¬ 0    πŸ“Œ 0

Congratulations to our Human Neural Circuitry team; bit.ly/4dEyX7Z publishes today in Science! This was the hardest challenge of my career, but one of the most rewarding, after years of rebuilding– & expanding my inpatient neuropsychiatry in the service of basic discovery bsky.app/profile/deis...

30.05.2025 05:32 β€” πŸ‘ 109    πŸ” 26    πŸ’¬ 4    πŸ“Œ 3

Signs I am, indeed, living in Munich, pt 1:

I just paid 9€ for a pretzel and croissant.

20.05.2025 17:45 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Definitely going to, soon!

18.05.2025 15:07 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

+1000

I think AI will help us do scientific research in numerous ways, but the bulk of the work that real scientists do is not anything that "AI scientists" will be able to do.

12.05.2025 14:07 β€” πŸ‘ 15    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

πŸ“Œ

07.05.2025 17:53 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Every now again it’s useful to repeat advice about accessing papers that are behind a paywall that excludes you. Email the author. My estimate is that 90% of academics are so thrilled that a living, breathing, possibly even reading, person shows interest that they will swiftly send you a copy.

03.05.2025 13:44 β€” πŸ‘ 1436    πŸ” 417    πŸ’¬ 49    πŸ“Œ 66

One of the undisputed scientific wins of the last few years.

17.04.2025 09:55 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Can wholeheartedly recommend the city, place and people to motivated to-be phd students! Don't hesitate to apply πŸ‘πŸ‘

10.04.2025 09:19 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
UniversitΓ€t Leipzig: GRK Neurotune

πŸš€ Now hiring: 10 Doctoral Researchers @ Leipzig University! πŸ§ πŸ”¬

Join the DFG funded RTG NeuroTune and explore how neurons fine-tune communication!
πŸ“ Start: Oct 1, 2025
🎯 Cutting-edge neuroscience + top-tier mentoring in vibrant Leipzig.

Apply now πŸ‘‰ www.lw.uni-leipzig.de/en/institut-...
#NeuroTune

10.04.2025 09:16 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1
Preview
Whole-body visualization of SARS-CoV-2 biodistribution in vivo by immunoPET imaging in non-human primates - Nature Communications There are limited approaches to monitor virus spread in vivo. Here, the authors report PET/CT-based in vivo imaging to track SARS-CoV-2 biodistribution in a COVID-19 non-human primate model using a ra...

BREAKING: Development of a spike protein-specific radiolabeled antibody used with PET imaging shows presence of spike in brain & lungs of macaque monkeys 3 months post-COVID; provides new viral reservoir detection opportunity for long COVID: www.nature.com/articles/s41...

28.03.2025 18:13 β€” πŸ‘ 118    πŸ” 37    πŸ’¬ 8    πŸ“Œ 6

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