Cloud-Based BRCA Exchange Variant Analysis Environment Using GA4GH Standards in Camber
By integrating BRCA Exchange variant data with GA4GH standards, this GA4GH Implementation Forum (GIF) project creates open, platform-agnostic workflows and tools that can be used by anyone for scalabl...
Announcing GIF Project: Cloud-based BRCA Exchange variant analysis environment using GA4GH standards in Camber. The project aims to adapt and extend community-driven standards to support interoperable workflows, variant annotation, and metadata description. Learn more: www.ga4gh.org/what-we-do/g...
22.07.2025 13:46 β π 1 π 2 π¬ 0 π 0
Nice to meet you too!
04.04.2025 22:16 β π 1 π 0 π¬ 0 π 0
Collected together @ga4gh.org Bluesky accounts here, lmk if you want to be added! go.bsky.app/8BDDMqM
03.04.2025 20:20 β π 2 π 1 π¬ 0 π 0
Calling all @ga4gh.org Connect 2025 attendees online and in-person, let's connect here on bluesky! #ga4ghconnect2025 #ga4gh #bioinformatics #genomics
01.04.2025 13:59 β π 6 π 1 π¬ 1 π 0
YouTube video by National Security Agency
Capt. Grace Hopper on Future Possibilities: Data, Hardware, Software, and People (Part One, 1982)
Grace Hopper could really get people laughing about information sciences and the struggles of working under strict hierarchies www.youtube.com/watch?v=si9i...
26.03.2025 21:04 β π 1 π 0 π¬ 0 π 0
YouTube video by Dynamicland
Summary of "Improvising to cellular playgrounds in Realtalk", Aug 2023
If you haven't caught up with the amazing new demos from @dynamicland.org now is your chance www.youtube.com/watch?v=Osn3...
12.03.2025 23:54 β π 2 π 0 π¬ 0 π 0
At the @mlcommons.org Croissant community meeting with, you guessed it
11.03.2025 17:50 β π 0 π 0 π¬ 0 π 0
Improvising cellular playgrounds in Realtalk
The photo we saw reminded me immediately of some of the goals of @dynamicland.org as seen here dynamicland.org/2023/Improvi...
26.02.2025 16:46 β π 0 π 0 π¬ 0 π 0
GitHub - dbcls/dive: Data Integration Visual Exploration (DIVE)
Data Integration Visual Exploration (DIVE). Contribute to dbcls/dive development by creating an account on GitHub.
Another important direction is making immersive visual experiences that make data models accessible in a visual and humane way. I hope to experience this in person at a museum github.com/dbcls/dive
26.02.2025 16:40 β π 0 π 0 π¬ 1 π 0
Nice to see this one making the rounds @dockstore.org @ucscgenomics.bsky.social
25.02.2025 17:21 β π 2 π 1 π¬ 0 π 0
Starter pack for #swat4hcls2025 conference go.bsky.app/PiZd2qR π£οΈ @swat4hcls.bsky.social
25.02.2025 17:09 β π 0 π 0 π¬ 0 π 0
Embedding knowledge graphs in order to compare ontologies using learned features from Shervin Mehryarβs keynote
25.02.2025 09:19 β π 0 π 0 π¬ 1 π 0
From Prof Anna Fenselβs keynote a roundup of some of the connections between AI and semantic
25.02.2025 09:11 β π 0 π 0 π¬ 1 π 0
One of the common themes of the conversations at #swat4hcls so far is that knowledge graphs are proving to be critical for reliability and interpretability of AI and LLMs in specific
25.02.2025 08:59 β π 1 π 0 π¬ 1 π 0
Excited to attend #SWAT4HCLS in Barcelona next week, representing @cambercloud.bsky.social ! π
At the hackathon, weβll explore #CroissantML for seamless dataset & model access via @hf.co and @kaggle.com π€
22.02.2025 20:23 β π 3 π 0 π¬ 0 π 0
Check out our first preprint from #biohacakathon Fukushima 2024 and expect more on this work π€ files.osf.io/v1/resources...
17.02.2025 22:02 β π 0 π 0 π¬ 0 π 0
We found some low hanging fruit for improvement and tested out bringing a bio dataset into Croissant. We think that continually increasing the use of ontologies and controlled vocabularies will be crucial for data harmonization and the new era of multimodal models!
17.02.2025 22:02 β π 1 π 1 π¬ 1 π 0
It works by providing a controlled vocabulary for high level dataset metadata as well as specific metadata for columnar data, which might seem like a small thing but is a huge step forward for bringing tools to data
17.02.2025 22:02 β π 0 π 0 π¬ 1 π 0
@hf.co , @kaggle.com , OpenML, DataVerse and others are all implementing some or part of the CroissantML spec that interoperates with tooling like Tensorflow so you can load datasets directly into your AI training code
17.02.2025 22:02 β π 1 π 0 π¬ 1 π 0
Biology datasets tend to be messy, require domain knowledge to parse, and not immediately usable for training AI models. Thatβs part of why I became interested in @mlcommons.org CroissantML as a way to bring ML tools to biology data β weβre presenting a poster on this effort at #swat4hcls next week!
17.02.2025 21:54 β π 2 π 0 π¬ 1 π 0
This is a great opportunity to contribute β
13.02.2025 08:05 β π 2 π 0 π¬ 0 π 0
@anthropic.com marked bioinformaticians as Office & Administrative for their job category π§ www.anthropic.com/news/the-ant...
13.02.2025 04:00 β π 0 π 0 π¬ 0 π 0
gestures in @worrydream.com
10.02.2025 21:46 β π 1 π 0 π¬ 0 π 0
My feed is full of people who are struggling to understand how they are going to continue their research and my heart goes out to everyone. Doing basic research is already hard enough
01.02.2025 19:28 β π 0 π 0 π¬ 0 π 0
Yeah or computational/storage costs needed to reproduce results. Thatβs what piqued my interest
31.01.2025 16:53 β π 0 π 0 π¬ 0 π 0
Appreciate your insights and tend to agree. I do like how they are trying to democratize publishing since I donβt think Elsevierβs of the world are adding much
31.01.2025 16:52 β π 0 π 0 π¬ 1 π 0
Has anyone in my network tried @researchhubf.bsky.social ?
30.01.2025 06:31 β π 1 π 0 π¬ 3 π 0
Head of Estonian Biobank & Professor of Pharmacogenomics at the Estonian Genome Centre, University of Tartu.
DNA samples and extensive health records of 20% of the adult population of Estonia (212,000 individuals), applied in 100s of international research projects.
www.biobank.ee
π¦ Virologyγ»π» Bioinformaticsγ»π Public Health
Scientific Coordinator @todospelasaude.bsky.socialγ»Affl. Member @ABCiencias
Past: UnB/USPγ»PhD @ImperialCollegeγ»Postdoc @yalesph.bsky.social
Associate Professor of Biomedical Informatics at the University of Colorado Anschutz Medical Campus | music enthusiast | slow jogger of short distances
AMR Antimicrobial Resistance
Fernanda C. Petersen,
Professor, University of Oslo and
Ulf R. Dahle,
Specialist Director,
Norwegian Institute of Public Health
Clinical Computational Oncology @vanallenlab DFCI and @culhanelab UL.
brendanreardon.com
Never ending apprentice of data illusionist, scientific software infrastructures and reproducibility and other (maybe useless) skills.
ORCID: 0000-0002-4806-5140
Director of Program Operations (Variant Effects Portfolio) CMAP, CAVA and the Atlas of Variant Effects Alliance | she/her π³οΈβπ
https://fowlerlab.gs.washington.edu/people
https://brotmanbaty.org/research/atlas-of-variant-effects
Advancing the promise of the Human Genome Project by interpreting the landscape of human genetic variation.
https://www.varianteffect.org
https://www.linkedin.com/company/atlas-of-variant-effects-alliance
GA4GH sets standards and frames policies to expand genomic and health data use within a human rights framework.
https://www.ga4gh.org
𧬠Human Data Sharing Expert
π± Community & Collaboration Builder
π©βπ» Bioinformatics & Metadata Enthusiast
π Open Science Advocate
πΊπΈ in π¬π§
Genomic medicine researcher; chief genomics officer at MGH; clinical lab director at @broadinstitute
Exec Director of @odissei.bsky.social and Associate Professor of Sociology, @erc.europa.eu StG. Co-Director of @ipdln.bsky.social & Social Science Lead at the PDPC (https://edu.nl/hr9eh). See https://tomemery.eu/ for more detail
Biomedical Engineer. Specializing in Clinical Informatics and Medical Data Science
Works on SPARQLing uniprot, rhea and friends.
[bridged from https://akademienl.social/@jerven on the fediverse by https://fed.brid.gy/ ]
