Marko Kaksonen's Avatar

Marko Kaksonen

@kaksonen.bsky.social

Biologist fascinated by cells, molecules and the evolution of cellular processes. Membrane traffic, cytoskeleton, microscopy, fungi, evolutionary cell biology. https://www.unige.ch/sciences/biochimie/labs/marko-kaksonen/

1,387 Followers  |  722 Following  |  29 Posts  |  Joined: 08.10.2023  |  1.9895

Latest posts by kaksonen.bsky.social on Bluesky

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Now Christopher Toret is talking about collective invasion organisations in eukaryotic multicellular transitions. #Multicellverse

11.10.2025 08:01 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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PhD or Master's position available for Fall 2026!

Interested in how actin drives cell crawling, eating, dividing, or osmoregulation? What about pathogenesis of a brain-eating amoeba? Or eukaryotic evolution? If so, apply through my website: katrinavelle.wixsite.com/science/cont...
Please share!

05.10.2025 17:29 β€” πŸ‘ 37    πŸ” 27    πŸ’¬ 1    πŸ“Œ 3
Schematic of MAPK signalling in fission yeast, budding yeast and Metazoa. No MAPK scaffold was known for ERK-like MAPK in fission yeast, as opposed to budding yeast Ste5 and metazoan KSR1/2.

Schematic of MAPK signalling in fission yeast, budding yeast and Metazoa. No MAPK scaffold was known for ERK-like MAPK in fission yeast, as opposed to budding yeast Ste5 and metazoan KSR1/2.

Mammalian cells have KSR, budding yeast has Ste5… and fission yeast has Sms1 as the MAPK scaffold for sexual reproduction!

Very excited to share my postdoc work where we discover that the hemi-arrestin Sms1 binds all components of the MAPK cascade, including ERK-like Spk1

doi.org/10.1101/2025...

25.09.2025 16:27 β€” πŸ‘ 36    πŸ” 10    πŸ’¬ 2    πŸ“Œ 3
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Be our new colleague! πŸŽ‰
The Dept of Molecular and Cellular Biology at the University of Geneva is hiring an Assistant Professor or Associate Professor.

πŸ‘‰ More details here: lnkd.in/e8Z9eAm4
πŸ‘‰ Our department: mocel.unige.ch

Please feel free to share this opportunity with your network.

15.09.2025 14:33 β€” πŸ‘ 42    πŸ” 48    πŸ’¬ 0    πŸ“Œ 1
Symposium in Lund September 25th
The cellular roots of evolutionary change
Sep 25 14:30 - 17:00
BlΓ₯ hallen, Ekologihuset, SΓΆlvegatan 37, Lund
How does cell- and developmental biology improve our understanding of the evolutionary process? Join us for an afternoon of discussions about cells, development and evolution.
Program
14:30 Introduction
14:40 Arild Husby, Plasticity of a life history trade-off: from GRN to high level phenotypes
15:10 MarkΓ©ta KauckΓ‘, Cell type evolution
15:40 Coffee break
16:00 Gunter Wagner, From cells to tissues and organs: nothing in evolutionary biology makes sense except in the light of cell biology
16:30 Emilia Santos, Interplay between genetics and phenotypic plasticity in the adaptation to novel environments
Bonus Sep 26:
09:00 Robin Pranter, Thesis defense - Neural crest cells and the evolution of a phenotypic syndrome
Lund University

Symposium in Lund September 25th The cellular roots of evolutionary change Sep 25 14:30 - 17:00 BlΓ₯ hallen, Ekologihuset, SΓΆlvegatan 37, Lund How does cell- and developmental biology improve our understanding of the evolutionary process? Join us for an afternoon of discussions about cells, development and evolution. Program 14:30 Introduction 14:40 Arild Husby, Plasticity of a life history trade-off: from GRN to high level phenotypes 15:10 MarkΓ©ta KauckΓ‘, Cell type evolution 15:40 Coffee break 16:00 Gunter Wagner, From cells to tissues and organs: nothing in evolutionary biology makes sense except in the light of cell biology 16:30 Emilia Santos, Interplay between genetics and phenotypic plasticity in the adaptation to novel environments Bonus Sep 26: 09:00 Robin Pranter, Thesis defense - Neural crest cells and the evolution of a phenotypic syndrome Lund University

How does cell end developmental biology inform our understanding of evolution? Join us for an afternoon of discussion about #cells, #development, #plasticity and #evolution.
Zoomlink Sep 25th: lu-se.zoom.us/j/62473328732
Zoomlink Sep 26th: lu-se.zoom.us/j/67411449026
#EvoDevo @biologylu.bsky.social

19.09.2025 11:54 β€” πŸ‘ 39    πŸ” 15    πŸ’¬ 0    πŸ“Œ 1
FocalPlane features... membrane trafficking
Thursday 25 September, 15:00 -17:00 BST (UTC+1)
Chaired by Francesca Bottanelli, Felix Campelo and Ishier Raote
Nick Ader (UNC Greensboro)
Keep it together! Mechanisms of membrane maintenance and biogenesis
Hannes Maib (University of Sheffield)
Multiplex and super resolution imaging of phosphoinositide conversion during receptor trafficking
MΓ³nica QuiΓ±ones-FrΓ­as (Brandeis University)
Loss of ER-Shaping protein Atlastin causes synaptic ER stress and membrane trafficking defects
Keynote speaker
Gillian Griffiths (Yale University)
Unexpected membrane dynamics in T cells

FocalPlane features... membrane trafficking Thursday 25 September, 15:00 -17:00 BST (UTC+1) Chaired by Francesca Bottanelli, Felix Campelo and Ishier Raote Nick Ader (UNC Greensboro) Keep it together! Mechanisms of membrane maintenance and biogenesis Hannes Maib (University of Sheffield) Multiplex and super resolution imaging of phosphoinositide conversion during receptor trafficking MΓ³nica QuiΓ±ones-FrΓ­as (Brandeis University) Loss of ER-Shaping protein Atlastin causes synaptic ER stress and membrane trafficking defects Keynote speaker Gillian Griffiths (Yale University) Unexpected membrane dynamics in T cells

Next Thursday Sept 25 (4-6pm CET) we have our first #FocalPlaneFeatures together with our #membranetrafficking community! Thanks to all who submitted such exciting abstracts. The final program is out, featuring a keynote by Gillian Griffiths. Register here: focalplane.biologists.com/2025/09/16/f...

16.09.2025 16:03 β€” πŸ‘ 15    πŸ” 13    πŸ’¬ 1    πŸ“Œ 2

hey bluesky πŸ‘‹ visa hurdles mean I’m looking for opportunities outside the US. I’m a computational biologist (bacterial + phage genomics, postdoc in Koonin’s group @ NIH). I am interested in teaming up on funding apps. reach out if this resonates!

15.09.2025 17:26 β€” πŸ‘ 70    πŸ” 91    πŸ’¬ 1    πŸ“Œ 3
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Do you know what happens when you touch a carnivorous sundew plant?
If the touch is strong and large enough, a cytosolic calcium wave will spread from the site of touch throughout the whole plant, but if you only touch one tentacle (see post below), the calcium wave will be local and less intense.

15.09.2025 14:26 β€” πŸ‘ 104    πŸ” 35    πŸ’¬ 7    πŸ“Œ 4

Yes! At first glance they look like crocuses, but they are actually more closely related to daffodils.

11.09.2025 15:39 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Sternbergia lutea flowers opening after autumn rains

Sternbergia lutea flowers opening after autumn rains

And quite suddenly the autumn daffodils start blooming…

11.09.2025 11:36 β€” πŸ‘ 9    πŸ” 1    πŸ’¬ 2    πŸ“Œ 0
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Allocation of resources among multiple daughter cells. New study from Alison Wirshing, Daniel Lew and colleagues @mit.edu: rupress.org/jcb/article/...

#Cytoskeleton #Development

09.09.2025 14:16 β€” πŸ‘ 9    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0
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Flagellar gliding in choanoflagellates Freire-Delgado and Brunet discover a new mode of cell motility in choanoflagellates, the closest relatives of animals. Under mild confinement, choanoflagellate move over surfaces without cell deformat...

New short paper from our lab @currentbiology.bsky.social, in which we discover of a new mode of cell motility for choanoflagellates: flagellar gliding. www.cell.com/current-biol... - A 🧡

09.09.2025 18:11 β€” πŸ‘ 209    πŸ” 86    πŸ’¬ 7    πŸ“Œ 7
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How do cells keep their #actin β€œhighways” stable?🚦
Our paper @PLOS Genetics reveals surprising teamwork (and backup plans!) between tropomyosin isoforms in yeast. #imaging #cytoskeleton #celldivision
This work was brilliantly led by @anubhavdhar.bsky.social @bagyasree.bsky.social
t.co/RvUrzad5tL

09.09.2025 18:21 β€” πŸ‘ 9    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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What could be more exciting than watching Euplotes scurry around under the microscope? How about adding some raptorial predation by supergiant cannibal cells?

www.biorxiv.org/content/10.1...

Video by Vittorio Boscaro.

1/n

26.08.2025 20:56 β€” πŸ‘ 112    πŸ” 37    πŸ’¬ 3    πŸ“Œ 11
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Leaving Barcelona after an exciting week of evolutionary biology at the #ESEB2025 meeting!

23.08.2025 07:28 β€” πŸ‘ 14    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Folks going to #ESEB2025 : To help people connect on Bluesky, I've started making starter packs. Here is a first one with the names that were available when I started.

Ping me if you want to be included in the next one!

14.08.2025 13:54 β€” πŸ‘ 81    πŸ” 45    πŸ’¬ 33    πŸ“Œ 2

Thanks Stephane!!

13.08.2025 11:03 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Want to acquire #ExM images like this and help us understand the true extent of cytoskeletal diversity across the tree of life? This position might be for you!

embl.wd103.myworkdayjobs.com/en-US/EMBL/j...

With @dudinlab.bsky.social
@embl.org @biology-unige.bsky.social @moorefound.bsky.social

07.08.2025 18:12 β€” πŸ‘ 105    πŸ” 55    πŸ’¬ 1    πŸ“Œ 2
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πŸŽ“ My team is seeking a PhD student in Biochemistry & Cell Biology at I2BC, Paris-Saclay!
πŸ”¬ Study cytoskeletal signaling in collective cell migration
🌍 Fully funded, 3 yrs | πŸ“ Gif-sur-Yvette, France
πŸ—“οΈ Apply by Aug 22 via the following link:
emploi.cnrs.fr/Offres/Docto...

06.08.2025 19:10 β€” πŸ‘ 12    πŸ” 15    πŸ’¬ 0    πŸ“Œ 0

The 1:1 ratio is an arbitrary definition from the film era that ignores the sensor pixel size, which is pretty important for macrophotography.
Just ask the trolls to show you their own 1:1 photos of flying insects!! πŸ˜€

05.08.2025 19:19 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
A schematic showing two models for the evolution of the eukaryotic cell plan starting from an archaeal ancestor. The "inside-out" and "outside-in" models both lead to an intermediate stage with internal and plasma membranes connected by tubules. The sequence continues through the formation of an endomembrane lumen, followed by the emergence of membrane contact sites and tubular carriers, and finally coated vesicles and stable compartments.

A schematic showing two models for the evolution of the eukaryotic cell plan starting from an archaeal ancestor. The "inside-out" and "outside-in" models both lead to an intermediate stage with internal and plasma membranes connected by tubules. The sequence continues through the formation of an endomembrane lumen, followed by the emergence of membrane contact sites and tubular carriers, and finally coated vesicles and stable compartments.

I set out to review the evolution of eukaryotic intracellular traffic, but along the way a new hypothesis came into focus: maybe the earliest membrane carriers were tubules, not coated vesicles!

New preprint: ecoevorxiv.org/repository/v...

Here’s the idea. 🧡

04.08.2025 20:34 β€” πŸ‘ 41    πŸ” 15    πŸ’¬ 5    πŸ“Œ 1
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Multi-scale Molecular Imaging of Human Cells reveals COPI and COPII Vesicles at ER Exit Sites Trafficking from the endoplasmic reticulum to the Golgi apparatus comprises the first steps toward the correct localization of 30% of eukaryotic proteins. Coat protein complexes COPII and COPI are inv...

Go check out the latest preprint from Giulia Zanetti's lab. @dr-downes.bsky.social used cryo-tomography to directly visualize COPI and COPII coated vesicles in situ at unprecedented resolution in human cells. Amazingly beautiful, rigorous, insightful work.
www.biorxiv.org/content/10.1...

04.08.2025 11:35 β€” πŸ‘ 36    πŸ” 14    πŸ’¬ 1    πŸ“Œ 1
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I was looking through my old microscopy videos, and found this perfect shot of a macropinosome forming through the collapse of an actin-driven membrane ruffle (cyan). Immediately, CRYI-A (orange) is recruited to the vesicle to finish the job. Still in awe with this process after all those years!

31.07.2025 23:17 β€” πŸ‘ 54    πŸ” 7    πŸ’¬ 0    πŸ“Œ 0
Screenshot of article summary of: Toward Science-Led Publishing by Damian Pattinson, George Currie published as an opinion piece, in Learned Publishing Summary The current dynamic of scholarly publishing prioritises the wants of the publishing industry over the needs of the research community. This article explores this theme through the lens of β€˜publisher-led science’ as a description of our current status quo, and through β€˜science-led publishing’ as an improved future state. We argue that financial motivations central to most publishing distort how research is presented, how it is assessed and even what research is undertaken, leading to a system that hinders, rather than facilitates, scientific progress. We propose three elements of a science-led publishing approach that would accelerate research communication, incentivise collaboration between authors, editors and reviewers, and create a more transparent and equitable research landscape. We believe that research funding and research assessment are two of the primary levers for wider change in research and research culture and consider the future purpose of scholarly publishing in a world where these proposals have been widely adopted.

Screenshot of article summary of: Toward Science-Led Publishing by Damian Pattinson, George Currie published as an opinion piece, in Learned Publishing Summary The current dynamic of scholarly publishing prioritises the wants of the publishing industry over the needs of the research community. This article explores this theme through the lens of β€˜publisher-led science’ as a description of our current status quo, and through β€˜science-led publishing’ as an improved future state. We argue that financial motivations central to most publishing distort how research is presented, how it is assessed and even what research is undertaken, leading to a system that hinders, rather than facilitates, scientific progress. We propose three elements of a science-led publishing approach that would accelerate research communication, incentivise collaboration between authors, editors and reviewers, and create a more transparent and equitable research landscape. We believe that research funding and research assessment are two of the primary levers for wider change in research and research culture and consider the future purpose of scholarly publishing in a world where these proposals have been widely adopted.

While academic publishing may not be broken, it isn’t built to serve science either. It runs on a chain of perverse incentives, but everything we need to rebuild it is already in our hands.

#OpenScience #AcademicSky
buff.ly/oSesI1s

12.07.2025 10:01 β€” πŸ‘ 47    πŸ” 16    πŸ’¬ 1    πŸ“Œ 0
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Mosaic evolution of clathrin-mediated endocytosis in fungi Picco et al. take an evolutionary approach to study clathrin-mediated endocytosis in a fungal clade and discover that the process is evolving in a mosaic fashion. The early phase of endocytosis has sh...

How does evolution shape ancient cellular processes? Our new paper uncovers the mosaic evolution of conserved and diverging endocytic traits in fungi!

www.cell.com/current-biol...

10.07.2025 15:31 β€” πŸ‘ 47    πŸ” 15    πŸ’¬ 1    πŸ“Œ 1
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The "reproducibility crisis" in science constantly makes headlines. Repro efforts are often limited. What if you could assess reproducibility of an entire field?

That's what @brunolemaitre.bsky.social et al. have done. Fly immunity is highly replicable & offers lessons for #metascience

A 🧡 1/n

10.07.2025 08:21 β€” πŸ‘ 319    πŸ” 172    πŸ’¬ 10    πŸ“Œ 18
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Intersectin and endophilin condensates prime synaptic vesicles for release site replenishment - Nature Neuroscience Time-resolved electron microscopy reveals that intersectin-1 and endophilin A1 condensates hold replacement synaptic vesicles close to release sites. Without this, replacement vesicles are unavailable...

Intersectin and endophilin condensates prime synaptic vesicles for release site replenishment

@watanabelab.bsky.social

www.nature.com/articles/s41...

09.07.2025 11:00 β€” πŸ‘ 13    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Hello microscopy and imaging experts and enthusiasts!
We are looking for a staff scientist to join us here in Geneva to work on microscopy and image analysis projects! See the link for the job announcement (in French and in English).

Please apply and/or repost!

jobs.unige.ch/www/wd_porta...

07.07.2025 14:05 β€” πŸ‘ 56    πŸ” 50    πŸ’¬ 0    πŸ“Œ 1
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Postdoc Research Group Schur The Schur lab at the Institute of Science and Technology Austria (ISTA) has an open postdoc position for a highly motivated candidate to be part of our ERC-funded project ActinID. Our Group ...

We're hiring a postdoc!
Join our ActinID project to explore an uncharacterized actin-binding protein.

- Background in cell and/or structural biology?
- Eager to bridge both fields?

Get in touch if you're curious or have questions!
#cellbiology #cryoEM #cryoET #actin

ista.ac.at/en/job/postd...

07.07.2025 09:21 β€” πŸ‘ 19    πŸ” 11    πŸ’¬ 1    πŸ“Œ 0
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Evolutionary repurposing of a DNA segregation machinery into a cytoskeletal system controlling cyanobacterial cell shape Bacteria, despite their diversity, use conserved cytoskeletal systems for their intracellular organization. In unicellular bacteria, the ParMRC DNA partitioning apparatus is well known for forming act...

One of the most exciting discoveries from our lab so far is now online as a preprint!

Read a story on how the ParMR and Min systems started to collaborate to create the CorMR cytoskeleton, which now controls cell shape in multicellular cyanobacteria:
www.biorxiv.org/content/10.1...

02.07.2025 11:35 β€” πŸ‘ 83    πŸ” 36    πŸ’¬ 2    πŸ“Œ 5

@kaksonen is following 20 prominent accounts