Susan Schlimpert's Avatar

Susan Schlimpert

@s-lab.bsky.social

Microbiologist, Group Leader at the John Innes Centre, UK. Our group is interested in bacterial cell biology and development. We are particularly passionate about #Streptomyces. Lab website: www.schlimpertlab.com

1,130 Followers  |  1,020 Following  |  31 Posts  |  Joined: 11.11.2024  |  1.5837

Latest posts by s-lab.bsky.social on Bluesky

Group Leader position available @johninnescentre.bsky.social !

It’s a creative and stimulating environment for plant and/or microbial biology - spanning the full spectrum of fundamental and applied research.

Apply to join us - don’t be shy!

04.08.2025 15:16 β€” πŸ‘ 13    πŸ” 10    πŸ’¬ 0    πŸ“Œ 0
A  to do list from the article in Nature

A to do list from the article in Nature

From bench to big boss: mitigating the widening gap between PI and lab

Laboratory dynamics can change as the age and experience of the principal investigator increase. But there are ways to combat this.

Read our piece in Nature, with @sprekeler.bsky.social

www.nature.com/articles/d41...

03.08.2025 08:12 β€” πŸ‘ 12    πŸ” 7    πŸ’¬ 0    πŸ“Œ 1
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Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites Zhang, Todeschini, and Wu et al. show that the bacterial defense system Kiwa senses phage attachment at the membrane and assembles a transmembrane complex that halts infection by blocking phage DNA re...

Thrilled to see our Kiwa story out today! A membrane-associated supercomplex that senses infection and blocks replication and transcription.

www.cell.com/cell/fulltex...

Huge congratulations to Yi and Zhiying for bringing it home, to Thomas for starting us off, and to all the collaborators.

28.07.2025 19:43 β€” πŸ‘ 106    πŸ” 48    πŸ’¬ 10    πŸ“Œ 5
Research Associate - Microbial Metabolomic Research Associate - Microbial Metabolomic

*JOB AD*: interested in doing a postdoc in microbial metabolomics? Passionate about natural products mass spec?

Come join the group! Informal enquires welcome!

Closing Date: 19 August 2025

jobs.ncl.ac.uk/job/Newcastl...

22.07.2025 14:32 β€” πŸ‘ 19    πŸ” 29    πŸ’¬ 0    πŸ“Œ 2

Congrats Phil!

23.07.2025 17:51 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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The Genetic Basis of Bacterial Adaptation to Hosts Microbes colonize and interact with diverse multicellular hosts using specialized genes, many of which remain unidentified. Better understanding of host-associated gene functions is a key aspect of mi...

πŸ“’ New preprint alert!
We used comparative genomics on 72,000+ bacterial genomes to uncover the genetic basis of microbial adaptation to multicellular hostsβ€”plants and animals alike.
www.biorxiv.org/content/10.1...

21.07.2025 06:39 β€” πŸ‘ 74    πŸ” 39    πŸ’¬ 3    πŸ“Œ 0
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We’re pleased to announce two new vacancies for senior roles at our institute:

Group Leader in Discovery Plant Sciences: www.jic.ac.uk/vacancies/gr...

πŸ—“οΈ Closes 25 August

Independent Fellowship in Plant-Associated Microbial Interactions: www.jic.ac.uk/vacancies/in...

πŸ—“οΈ Closes 5 September

17.07.2025 15:56 β€” πŸ‘ 42    πŸ” 63    πŸ’¬ 2    πŸ“Œ 3
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a man wearing sunglasses and a white t-shirt is holding something in his hands . ALT: a man wearing sunglasses and a white t-shirt is holding something in his hands .

We wrote 2 πŸ“• chapters with tips & tricks to identify protein-protein interactions in bacteria 🦠

1) In vivo proximity labeling with miniTurbo link.springer.com/protocol/10....

2) An adapted polar recruitment assay feat. E. coli as a test tube link.springer.com/protocol/10.....

Enjoy #MicroSky πŸ§ͺ

16.07.2025 11:05 β€” πŸ‘ 40    πŸ” 15    πŸ’¬ 1    πŸ“Œ 0
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Optical Microscopy Support Specialist | John Innes Centre An exciting opportunity has arisen for an Optical Microscopy Support Specialist to join the Bioimaging Platform at the John Innes Centre.

VACANCY - We’re seeking an Optical Microscopy Support Specialist to join our Bioimaging Platform, to help train users on light microscopes, collaborate on imaging projects and provide technical support.

www.jic.ac.uk/vacancies/op...

Closing date - 11 August 2025
Contract - Full time, indefinite

15.07.2025 17:51 β€” πŸ‘ 12    πŸ” 18    πŸ’¬ 0    πŸ“Œ 2
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Group Leader in Discovery Plant Sciences | John Innes Centre The John Innes Centre (JIC) seeks a visionary Group Leader to lead research on Discovery Plant Science.

GROUP LEADER VACANCY

JIC is recruiting a Group Leader in Discovery Plant Sciences.

If you think your research would synergise and thrive at JIC, please apply.

www.jic.ac.uk/vacancies/gr...

16.07.2025 10:46 β€” πŸ‘ 65    πŸ” 89    πŸ’¬ 1    πŸ“Œ 3
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Independent Fellowship in Plant-Associated Microbial Interactions | John Innes Centre An exciting opportunity for an Independent Fellowship in Plant-Associated Microbial Interactions has arisen at the John Innes Centre. To read the full job description for this role…

New Independent Fellowship position in Microbiology to launch your lab in our department @johninnescentre.bsky.social (UK). We are conducting a broad search in the area of plant-associated microbial interactions. Message me if you have any questions.

Apply here: www.jic.ac.uk/vacancies/in...

10.07.2025 06:28 β€” πŸ‘ 76    πŸ” 94    πŸ’¬ 1    πŸ“Œ 4

Nice one! Congratulations Thomas & team

09.07.2025 14:04 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Evidence supporting the first secondary chromosome in actinobacteria as a hallmark of the Embleya genus Embleya is a genus within the family Streptomycetaceae, a group of actinobacteria with outstanding capacity for production of specialised metabolites and a strikingly complex life cycle. In this work, we sequenced the complete genome of the new species Embleya australiensis MST-11070 and validated the assembly using optical mapping. The genome of E. australiensis MST-11070 consists of a 7.1 Mb linear chromosome and three additional replicons, including a 4.2 Mb linear replicon, EEC1, significantly larger than all previously described secondary replicons from bacteria. EEC1 is typified by its similar composition to the chromosome in terms of GC-content, codon usage and gene functions. It also carries terminal inverted repeats identical to the chromosome. EEC1 is enriched in biosynthetic gene clusters (BGCs), including the only copy of the BGCs for the spore pigment and the surfactant peptide SapB, metabolites essential for the organism's lifecycle. EEC1 contains an origin of replication with at least some chromosomal properties, and its replication is likely to depend on functions provided by chromosomally located genes. Further comparison of Embleya spp. genomes suggests that EEC1-like replicons are conserved across the genus, in contrast to other known large linear extrachromosomal replicons (megaplasmids) in the order. EEC1 is thus a hallmark of the Embleya genus and is central to its evolution within the Streptomycetaceae family. We propose EEC1 as a secondary chromosome, distinct from previously described secondary chromosomes that utilise plasmid-like replication mechanisms (chromids) and the largest secondary replicon reported in bacteria, to date. ### Competing Interest Statement Ernest Lacey is a Founder, Board Member, and the Managing Director of Microbial Screening Technology Pty. Ltd. The authors declare no competing financial interests. Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/P021506/1, BBS/E/J/000PR9790, BB/X01097X/1, BB/M011216/1 Novo Nordisk Foundation, https://ror.org/04txyc737, NNF22OC0078997

Our new preprint is out! EEC1 is a massive 4.2 Mb secondary chromosome from Embleya australiensis. Conserved across Embleya, these are the first replicons of their kind in Actinobacteria and the largest secondary replicons in bacteria identified to-date!

1/6 🦠πŸ§ͺπŸ§¬πŸ”¬

www.biorxiv.org/content/10.1...

09.07.2025 11:56 β€” πŸ‘ 27    πŸ” 12    πŸ’¬ 3    πŸ“Œ 1

Thank you :)

09.07.2025 14:02 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Thank you Khaled :)

09.07.2025 07:11 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Function and firing of the Streptomyces coelicolor contractile injection system requires the membrane protein CisA CryoEM, genetic, and cell biological analyses reveal that the conserved membrane protein CisA mediates membrane recruitment of contractile injection systems Streptomyces coelicolor, enabling their act...

Happy to see our collaborative work on the contractile injection system (CIS) in Streptomyces published. We show that the membrane protein CisA gives Streptomyces CIS a licence to kill.
@pilhoferlab.bsky.social & Bastien Casu, @joesallmen.bsky.social #MicroSky

elifesciences.org/articles/104...

09.07.2025 06:46 β€” πŸ‘ 40    πŸ” 18    πŸ’¬ 2    πŸ“Œ 0
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Folddisco finds similar (dis)continuous 3D motifs in large protein structure databases. Its efficient index enables fast uncharacterized active site annotation, protein conformational state analysis and PPI interface comparison. 1/9🧢🧬
πŸ“„ www.biorxiv.org/content/10.1...
🌐 search.foldseek.com/folddisco

07.07.2025 08:21 β€” πŸ‘ 148    πŸ” 70    πŸ’¬ 8    πŸ“Œ 3

The ParA-like ATPase PldP influences the TatA dynamics in Corynebacterium glutamicum https://www.biorxiv.org/content/10.1101/2025.07.02.662783v1

06.07.2025 00:17 β€” πŸ‘ 8    πŸ” 6    πŸ’¬ 1    πŸ“Œ 0
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SpoIIIL is a forespore factor required for efficient cell-cell signalling during Bacillus subtilis sporulation Author summary Bacterial endospores allow bacteria to survive stress, persist in the environment and seed new and recurring infections. Cell-cell signalling is a cornerstone of how bacteria develop in...

Checkout the latest paper from our lab in PLOS Genetics: dx.plos.org/10.1371/jour...

Thanks to our wonderful collaborators, @sgribaldo.bsky.social, @cavalab.bsky.social, @perbullough.bsky.social and Cecile Morlot.

03.07.2025 21:29 β€” πŸ‘ 22    πŸ” 9    πŸ’¬ 2    πŸ“Œ 2

Bacteria fending off bacterial predators with Curli amyloid proteins!

03.07.2025 05:04 β€” πŸ‘ 22    πŸ” 6    πŸ’¬ 1    πŸ“Œ 1
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Expanding the diversity of bacterial DNA partitioning: A CTP-independent ParABS system for plasmid partitioning in Streptomyces | PNAS The ATP- and CTP-dependent ParA-ParB-parS segrosome is a macromolecular complex that segregates chromosomes/plasmids in most bacterial species. CTP...

Finally published! Many thanks to the reviewers and editor whose comments & suggestions improved this work significantly more than the first preprint version!!!

www.pnas.org/doi/10.1073/...

02.07.2025 17:49 β€” πŸ‘ 49    πŸ” 20    πŸ’¬ 1    πŸ“Œ 2
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πŸ”¬πŸ‘¨β€πŸ’»πŸ“° #SReD is out!
Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚑️
Brainchild of @afonsomendes92.bsky.social and adventure w @christlet.bsky.social lab + friends.

Check: www.nature.com/articles/s41...

02.07.2025 07:09 β€” πŸ‘ 108    πŸ” 41    πŸ’¬ 3    πŸ“Œ 5

Many congratulations to all the newly elected EMBO members and in particular to Martin Pilhofer @pilhoferlab.bsky.social 🍾

01.07.2025 16:52 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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New Postdoc position (2yrs) available in our #EvoMPMI lab @JohnInnesCentre. Come and work with on harnessing the diversity of immune mechanisms to protect plants. jobs.jic.ac.uk/Details.asp?va…

30.06.2025 13:12 β€” πŸ‘ 46    πŸ” 51    πŸ’¬ 1    πŸ“Œ 1
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After 5 amazing years @pilhoferlab.bsky.social I'm starting my lab @embl.org Grenoble this November embl.org/wollweber
We'll image Asgard archaea and many other strange microbes ( #archaeasky, #protistsonsky..) to understand eukaryogenesis
First job ad: #teamtomo scientist!πŸ”¬β„οΈ tinyurl.com/2rdu2ze6

27.06.2025 10:58 β€” πŸ‘ 157    πŸ” 45    πŸ’¬ 9    πŸ“Œ 5
Alejandra introducing her poster

Alejandra introducing her poster

If you want to know more about how rhizosphere members impact Streptomyces growth and how this can be used to activate silent BGCs visit p234 today and ask the very talented @alejandradiag.bsky.social all about it! #isba2025

17.06.2025 12:22 β€” πŸ‘ 15    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Profs Gilles van Wezel and Eva Stegmann giving the Welcome Ceremony of the 20th International Symposium on the Biology of Actinomycetes in Edmond aan Zee (coastal Netherlands) #ISBA2025 #actinomycetes #streptomyces

15.06.2025 14:46 β€” πŸ‘ 26    πŸ” 7    πŸ’¬ 3    πŸ“Œ 0

We are recruiting a tenure-track assistant professor in molecular microbiology in our department in Lausanne! Do consider appyling!!

12.06.2025 12:45 β€” πŸ‘ 37    πŸ” 60    πŸ’¬ 0    πŸ“Œ 0
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Staphylococcus aureus as an emerging model to study bacterial cell division Research on bacterial cell division has traditionally focused on rod-shaped model organisms such as Escherichia coli and Bacillus subtilis. While these models have been important in uncovering broadly...

@felixrl.bsky.social's new review in JBC highlights recent research on how #Staph aureus performs several interrelated processes like peptidoglycan assembly, cell division septum placement, and how the septum is a hub for modifying the PG to decorate the cell surface:
www.jbc.org/article/S002...

09.06.2025 11:10 β€” πŸ‘ 31    πŸ” 11    πŸ’¬ 0    πŸ“Œ 2
DMF: Tenure Track Assistant Professor towards Associate Professor in Molecular Microbiology - Site des postulations FBM

New tenure track assistant professor position in molecular microbiology in our department @dmf-unil.bsky.social @unil.bsky.social! We are casting a wide net for an experimental molecular microbiologist. Apply here: wwwfbm.unil.ch/releve/appli...

10.06.2025 13:53 β€” πŸ‘ 112    πŸ” 162    πŸ’¬ 0    πŸ“Œ 8

@s-lab is following 20 prominent accounts