If youβre in Liverpool, stop by my poster A217 at ISMB/EECB 2025, and chat about all things pangenomes, MUMs, and alignment (and the Beatles or Oasis-mania)
21.07.2025 15:11 β π 16 π 6 π¬ 2 π 0
Excited to share our new preprint on detecting foldback artifacts in long reads with my advisors Matthew Meyerson and @lh3lh3.bsky.social ! Stop by poster C-180 on Wednesday at ISMB/ECCB2025 to learn more and chat!
21.07.2025 14:26 β π 4 π 2 π¬ 0 π 0
Our pre-print on investigating variation in South Asian genomes is now out!
Thank you to @mikeschatz.bsky.social, @rajivmccoy.bsky.social and @aabiddanda.bsky.social for all their work on this.
𧡠A thread on the key results and takeaways from our work:
15.05.2025 14:19 β π 23 π 9 π¬ 2 π 6
Combining DNA and protein alignments to improve genome annotation with LiftOn
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
Friends, LiftOn is now published in @genomeresearch.bsky.social! LiftOn maps genes across genomes using a protein-centric, homology-based approach with both DNA & protein alignments
@stevensalzberg.bsky.social Mihaela Pertea, Jakob Heinz, Alaina Shumate, Celine Hoh, Alan Mao
doi.org/10.1101/gr.2...
03.03.2025 14:24 β π 32 π 15 π¬ 1 π 0
Debugging wet code π»π§¬
@XDBio, JHMI; Langmead Lab
PhD student at the NHGRI genomeinformatics.github.io & JHU Schatzlab
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PhD student in CompSci, Johns Hopkins University. I try to find rare and common variants with impacts on traits/health.
CS PhD student in the Battle Lab at JHU
Statistician and computational biologist; uw alum; jhu student. He/him. http://ekernf01.github.io
Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT.
I like thinking about computational biological sequence analysis and its applications to metagenomics.
https://jim-shaw-bluenote.github.io
Associate prof @JHUBME. Doing #spatialtranscriptomics #compbio #dataviz #rstats. Founder @cuSTEMized. Editor @PLOSCompBio. Alum @HarvardDBMI @mbhsmagnet.
PI, Bioinformatics, NBACC
Previously: Johns Hopkins Center for Computational Biology
Computational genomics PhD student at Johns Hopkins BME
PhD student interested in computational immunology | Karchin Lab, Johns Hopkins | University of Edinburgh and Zhejiang University alum | #FirstGen | Indonesian | adelevaleria.substack.com
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. Assistant Prof at the Department of Biomedical Data Science at Dartmouth College. Research on bioinformatics, algorithms. Lab page: mourisl.github.io
Comp Bio PhD Student in Kushal Dey and Thomas Norman labs at MSK Cancer Center. Interested in gene regulation and sports
PhD candidate at Johns Hopkins | Alexis Battle lab | Computational Biology | Machine Learning | He/Him
Research Scientist at Johns Hopkins University, interested in molecular biology and genetics (that's as specific as possible), mom, reading fanatic (she/her/hers, my views are my own)
Bio student in the Battle Lab at JHU
Interested in dynamic effects of genetic variation across differentiation
PhD student Bernstein lab, Harvard Med | Previously Doudna lab, UC Berkeley & Drost lab, Utrecht University
Associate Professor
DFCI & HMS
Associate Professor at Johns Hopkins studying human evolutionary and reproductive genetics https://mccoy-lab.org
Ph.D. Candidate in the Biological and Biomedical Sciences (BBS) Program at Harvard Medical School
Human genetics & evolution | PhD student with Rajiv McCoy at Johns Hopkins | Bikes | https://scarioscia.github.io/
